Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895762_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 196269 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 20967 | 10.682787398926981 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2939 | 1.4974346432702057 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1600 | 0.8152076996367231 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1007 | 0.5130713459588626 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCCG | 972 | 0.4952386775293092 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCCA | 806 | 0.4106608786919992 | No Hit |
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 549 | 0.2797181419378506 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 487 | 0.2481288435769276 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 398 | 0.20278291528463485 | No Hit |
AGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA | 371 | 0.18902628535326516 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTTCCTGGCAAGTAAAAAAAA | 345 | 0.17577916023416842 | No Hit |
AGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTG | 297 | 0.1513229292450667 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 241 | 0.1227906597577814 | No Hit |
CAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT | 240 | 0.12228115494550845 | No Hit |
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA | 236 | 0.12024313569641665 | No Hit |
AACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAG | 236 | 0.12024313569641665 | No Hit |
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG | 221 | 0.11260056351232238 | No Hit |
CAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 220 | 0.11209105870004941 | No Hit |
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC | 216 | 0.11005303945095762 | No Hit |
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG | 208 | 0.105977000952774 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACATCGC | 10 | 0.007086252 | 145.00203 | 9 |
CGGTCTG | 40 | 6.649394E-5 | 72.501015 | 145 |
CGTGGGG | 225 | 0.0 | 61.223083 | 145 |
AAGCAGT | 16260 | 0.0 | 46.55047 | 1 |
GTATCAA | 16470 | 0.0 | 45.95693 | 9 |
GTGGTAT | 16460 | 0.0 | 45.885067 | 6 |
TGGTATC | 16475 | 0.0 | 45.85497 | 7 |
AGTGGTA | 16545 | 0.0 | 45.69314 | 5 |
GGTATCA | 16570 | 0.0 | 45.635826 | 8 |
CAGTGGT | 16670 | 0.0 | 45.35051 | 4 |
GCAGTGG | 16850 | 0.0 | 44.90907 | 3 |
AGCAGTG | 16895 | 0.0 | 44.832355 | 2 |
CGAGCGG | 85 | 5.325306E-5 | 42.64766 | 145 |
CTTGAGA | 145 | 1.9141225E-8 | 40.000565 | 145 |
CCTGGGG | 335 | 0.0 | 30.298935 | 145 |
CGTGGGA | 170 | 2.9951552E-6 | 29.853361 | 145 |
CGCGAAA | 25 | 5.1548827E-4 | 28.99893 | 90-94 |
AGAGAGT | 300 | 5.7843863E-10 | 26.583706 | 145 |
CGACCTA | 50 | 7.8487574E-8 | 26.093716 | 45-49 |
CGCGGAC | 35 | 1.2555819E-4 | 24.857492 | 135-139 |