Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895748_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 858976 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 23276 | 2.70973810676899 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 6330 | 0.7369239652795887 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 3905 | 0.45461107178780313 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 2537 | 0.2953516745520247 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGTTTCAAAGTGGAGAACC | 1768 | 0.20582647245091829 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1417 | 0.16496386394963305 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 1139 | 0.13259974667511082 | No Hit |
TGTCTTGATGACTGCTGATTTTCTGGAATGGAAAATTAAGTTGTTTAGTG | 980 | 0.11408933427709274 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 937 | 0.1090833736914652 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 22195 | 0.0 | 72.65125 | 1 |
GTGGTAT | 22880 | 0.0 | 70.06013 | 6 |
GGTATCA | 23020 | 0.0 | 69.886 | 8 |
AGTGGTA | 23005 | 0.0 | 69.67944 | 5 |
GTATCAA | 23105 | 0.0 | 69.6289 | 9 |
TGGTATC | 23130 | 0.0 | 69.36557 | 7 |
AGCAGTG | 23210 | 0.0 | 69.321976 | 2 |
CAGTGGT | 23265 | 0.0 | 68.90876 | 4 |
GCAGTGG | 23900 | 0.0 | 67.138596 | 3 |
GATAGAC | 230 | 0.0 | 47.285378 | 1 |
CCGGCTT | 230 | 3.488458E-8 | 28.367924 | 145 |
ATAGACA | 415 | 0.0 | 26.20788 | 2 |
CGGTCTG | 205 | 1.290567E-5 | 24.754665 | 145 |
TACGCAC | 180 | 0.0 | 23.36112 | 50-54 |
ATAGGCG | 195 | 0.0 | 22.308739 | 100-104 |
GAAACCG | 575 | 0.0 | 22.191313 | 85-89 |
TCCGGCG | 190 | 0.0 | 22.131071 | 35-39 |
CATGGGG | 3795 | 0.0 | 21.9315 | 25-29 |
CGACCTA | 200 | 0.0 | 21.748997 | 45-49 |
AAACCGC | 590 | 0.0 | 21.381365 | 85-89 |