FastQCFastQC Report
Sun 19 Mar 2023
SRR4895745_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895745_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences312123
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG102403.2807579063382066No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20000.640773028581681No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA16750.5366474114371578No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG7790.24958109463256473No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT5900.18902804343159588No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC4120.13199924388782627No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC3280.10508677668739567No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT105100.073.739961
AGTGGTA107350.071.58665
AGCAGTG108300.071.36032
GTATCAA109150.071.070279
CAGTGGT108300.070.958654
GGTATCA109350.070.9402858
GTGGTAT108600.070.762636
TGGTATC109800.070.055297
GCAGTGG111550.069.0212553
CGGTCTG750.001481990338.66577145
ACATCCG1102.4326619E-432.95378145
GCCCCAA2456.410119E-826.632034145
CGCGAAA459.114847E-725.7771890-94
ATGGGGC5550.021.94543825-29
CATGGGG18600.021.43767525-29
TACGCAC1150.021.43428450-54
CGTGGGA1700.003088500621.323036145
CCGCGAA555.2148043E-621.0904290-94
CCGCAAG2505.9587186E-520.29953145
ATAGGCG801.6338163E-819.937037100-104