Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895745_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 312123 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 10240 | 3.2807579063382066 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2000 | 0.640773028581681 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1675 | 0.5366474114371578 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 779 | 0.24958109463256473 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 590 | 0.18902804343159588 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 412 | 0.13199924388782627 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 328 | 0.10508677668739567 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 10510 | 0.0 | 73.73996 | 1 |
AGTGGTA | 10735 | 0.0 | 71.5866 | 5 |
AGCAGTG | 10830 | 0.0 | 71.3603 | 2 |
GTATCAA | 10915 | 0.0 | 71.07027 | 9 |
CAGTGGT | 10830 | 0.0 | 70.95865 | 4 |
GGTATCA | 10935 | 0.0 | 70.940285 | 8 |
GTGGTAT | 10860 | 0.0 | 70.76263 | 6 |
TGGTATC | 10980 | 0.0 | 70.05529 | 7 |
GCAGTGG | 11155 | 0.0 | 69.021255 | 3 |
CGGTCTG | 75 | 0.0014819903 | 38.66577 | 145 |
ACATCCG | 110 | 2.4326619E-4 | 32.95378 | 145 |
GCCCCAA | 245 | 6.410119E-8 | 26.632034 | 145 |
CGCGAAA | 45 | 9.114847E-7 | 25.77718 | 90-94 |
ATGGGGC | 555 | 0.0 | 21.945438 | 25-29 |
CATGGGG | 1860 | 0.0 | 21.437675 | 25-29 |
TACGCAC | 115 | 0.0 | 21.434284 | 50-54 |
CGTGGGA | 170 | 0.0030885006 | 21.323036 | 145 |
CCGCGAA | 55 | 5.2148043E-6 | 21.09042 | 90-94 |
CCGCAAG | 250 | 5.9587186E-5 | 20.29953 | 145 |
ATAGGCG | 80 | 1.6338163E-8 | 19.937037 | 100-104 |