Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895743_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 607307 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 26117 | 4.300460887162505 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4343 | 0.7151243110980113 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 4310 | 0.7096904860309531 | No Hit |
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 710 | 0.11690956962458855 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 20725 | 0.0 | 63.28022 | 1 |
AGCAGTG | 21440 | 0.0 | 61.03464 | 2 |
AGTGGTA | 22090 | 0.0 | 59.041775 | 5 |
GTGGTAT | 22155 | 0.0 | 58.863705 | 6 |
GGTATCA | 22270 | 0.0 | 58.62967 | 8 |
TGGTATC | 22280 | 0.0 | 58.538277 | 7 |
GTATCAA | 22490 | 0.0 | 58.24956 | 9 |
CAGTGGT | 22500 | 0.0 | 57.933678 | 4 |
GCAGTGG | 23080 | 0.0 | 56.54063 | 3 |
CGGTCTG | 125 | 2.7207898E-7 | 40.592 | 145 |
CATGCGA | 145 | 3.492857E-5 | 29.99409 | 145 |
CGGAGCC | 160 | 6.832952E-5 | 27.182144 | 145 |
TAACCCG | 30 | 0.0014952547 | 24.165884 | 115-119 |
CGTGCGC | 150 | 0.0014953138 | 24.161905 | 145 |
CGACCTA | 150 | 0.0 | 23.19581 | 45-49 |
CATGGGG | 3000 | 0.0 | 22.960995 | 25-29 |
CCGTCTT | 710 | 0.0 | 21.439438 | 145 |
CCGGCTT | 375 | 7.765266E-9 | 21.262478 | 145 |
TACGCAC | 165 | 0.0 | 21.08849 | 50-54 |
TTTCCGG | 230 | 0.0 | 18.917416 | 30-34 |