Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895741_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 771738 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 13041 | 1.689822193542368 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5869 | 0.7604912548040915 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2338 | 0.3029525564375475 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 984 | 0.12750441211913888 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 18600 | 0.0 | 91.44625 | 1 |
GGTATCA | 18910 | 0.0 | 89.79376 | 8 |
AGTGGTA | 18875 | 0.0 | 89.7298 | 5 |
GTGGTAT | 18960 | 0.0 | 89.212814 | 6 |
GTATCAA | 19020 | 0.0 | 89.15432 | 9 |
AGCAGTG | 19135 | 0.0 | 88.78156 | 2 |
TGGTATC | 19100 | 0.0 | 88.63481 | 7 |
CAGTGGT | 19340 | 0.0 | 87.54057 | 4 |
GCAGTGG | 19955 | 0.0 | 84.76996 | 3 |
CGCATAC | 225 | 0.0 | 51.55708 | 1 |
CGGTCTG | 225 | 2.8145223E-8 | 29.000856 | 145 |
GCCCCAA | 805 | 0.0 | 27.920078 | 145 |
AGCGCAT | 140 | 9.990799E-4 | 25.893621 | 145 |
CGACCTA | 285 | 0.0 | 25.437698 | 45-49 |
GCATACA | 460 | 0.0 | 25.219769 | 2 |
TACGCAC | 300 | 0.0 | 24.165813 | 50-54 |
TCCGGCG | 290 | 0.0 | 23.500694 | 35-39 |
CATGGGG | 3960 | 0.0 | 23.397509 | 25-29 |
CGGAGCC | 290 | 3.2831122E-7 | 22.500664 | 145 |
TTAGCGC | 80 | 6.91216E-10 | 21.749514 | 40-44 |