Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895738_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 673094 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 8314 | 1.2351915185694717 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 6928 | 1.029276742921494 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1383 | 0.20546907267038483 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 945 | 0.1403964379418031 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT | 835 | 0.12405399543005881 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 761 | 0.11305998864943084 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12820 | 0.0 | 99.24413 | 8 |
AGTGGTA | 12845 | 0.0 | 99.17122 | 5 |
GTGGTAT | 12840 | 0.0 | 98.8637 | 6 |
AAGCAGT | 12995 | 0.0 | 98.53594 | 1 |
GTATCAA | 12970 | 0.0 | 98.04047 | 9 |
TGGTATC | 12950 | 0.0 | 98.023926 | 7 |
AGCAGTG | 13255 | 0.0 | 96.60314 | 2 |
CAGTGGT | 13320 | 0.0 | 95.53295 | 4 |
GCAGTGG | 13395 | 0.0 | 95.160446 | 3 |
CGAACTT | 75 | 3.7568134E-7 | 58.005646 | 1 |
CGGTCTG | 210 | 0.0 | 51.78306 | 145 |
CGATAGG | 35 | 3.7769933E-6 | 29.0011 | 35-39 |
CCGCAAG | 760 | 0.0 | 25.755259 | 145 |
GTCGGTA | 40 | 1.0667467E-5 | 25.374077 | 90-94 |
TGCGGCT | 470 | 0.0 | 24.679585 | 145 |
CATGGGG | 3795 | 0.0 | 24.301317 | 25-29 |
GGTCTGA | 310 | 2.4161636E-8 | 23.385897 | 145 |
TACGCAC | 165 | 0.0 | 22.847313 | 50-54 |
ATAGGCG | 280 | 0.0 | 21.750824 | 100-104 |
CGACCTA | 175 | 0.0 | 21.541754 | 45-49 |