FastQCFastQC Report
Sun 19 Mar 2023
SRR4895733_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895733_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1307050
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG513703.9302245514708694No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA127950.9789219999234919No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA70970.54297846295092No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC20700.15837190620098696No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT18820.14398837075857848No Hit
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA13830.10581079530239852No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG13700.10481618912818944No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT468550.069.513041
AGTGGTA473350.068.616455
GTGGTAT475750.068.221986
GGTATCA477900.068.172948
GTATCAA480000.067.9955149
TGGTATC479900.067.707557
AGCAGTG480300.067.608472
CAGTGGT480300.067.593374
GCAGTGG489300.066.246373
CATGCGT1504.3978034E-529.00186145
CGGTCTG3800.026.71224145
CCGCAAG13150.023.708744145
CATGGGG73600.022.34126925-29
TACGCAC3450.021.85413450-54
CGACCTA3550.021.23836145-49
CGATAGG659.849427E-720.07636635-39
CCCGAAC1250.019.721718130-134
ATGGGGG26900.019.67492925-29
GTCGGTA1200.019.33294590-94
ATGGGGT12850.019.29592325-29