Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895733_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1307050 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 51370 | 3.9302245514708694 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12795 | 0.9789219999234919 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 7097 | 0.54297846295092 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 2070 | 0.15837190620098696 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 1882 | 0.14398837075857848 | No Hit |
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 1383 | 0.10581079530239852 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1370 | 0.10481618912818944 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 46855 | 0.0 | 69.51304 | 1 |
AGTGGTA | 47335 | 0.0 | 68.61645 | 5 |
GTGGTAT | 47575 | 0.0 | 68.22198 | 6 |
GGTATCA | 47790 | 0.0 | 68.17294 | 8 |
GTATCAA | 48000 | 0.0 | 67.995514 | 9 |
TGGTATC | 47990 | 0.0 | 67.70755 | 7 |
AGCAGTG | 48030 | 0.0 | 67.60847 | 2 |
CAGTGGT | 48030 | 0.0 | 67.59337 | 4 |
GCAGTGG | 48930 | 0.0 | 66.24637 | 3 |
CATGCGT | 150 | 4.3978034E-5 | 29.00186 | 145 |
CGGTCTG | 380 | 0.0 | 26.71224 | 145 |
CCGCAAG | 1315 | 0.0 | 23.708744 | 145 |
CATGGGG | 7360 | 0.0 | 22.341269 | 25-29 |
TACGCAC | 345 | 0.0 | 21.854134 | 50-54 |
CGACCTA | 355 | 0.0 | 21.238361 | 45-49 |
CGATAGG | 65 | 9.849427E-7 | 20.076366 | 35-39 |
CCCGAAC | 125 | 0.0 | 19.721718 | 130-134 |
ATGGGGG | 2690 | 0.0 | 19.674929 | 25-29 |
GTCGGTA | 120 | 0.0 | 19.332945 | 90-94 |
ATGGGGT | 1285 | 0.0 | 19.295923 | 25-29 |