Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895731_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1124855 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 12429 | 1.1049424148001297 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12379 | 1.1004973974423369 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1733 | 0.15406430162109783 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 19465 | 0.0 | 88.86802 | 8 |
AGTGGTA | 19580 | 0.0 | 88.05377 | 5 |
AAGCAGT | 19740 | 0.0 | 88.053566 | 1 |
GTGGTAT | 19590 | 0.0 | 87.9679 | 6 |
GTATCAA | 19855 | 0.0 | 87.447174 | 9 |
TGGTATC | 19835 | 0.0 | 86.88133 | 7 |
AGCAGTG | 20235 | 0.0 | 85.46191 | 2 |
CAGTGGT | 20300 | 0.0 | 85.04539 | 4 |
GCAGTGG | 20935 | 0.0 | 82.29262 | 3 |
CGGTCTG | 285 | 0.0 | 43.248615 | 145 |
CCGACGC | 75 | 0.0014829601 | 38.669346 | 145 |
GCGAACG | 20 | 0.006078716 | 28.998142 | 35-39 |
CAATGGA | 855 | 0.0 | 25.443754 | 1 |
TACGCAC | 370 | 0.0 | 24.687609 | 50-54 |
CGACCTA | 370 | 0.0 | 23.512009 | 45-49 |
CATGGGG | 5810 | 0.0 | 22.711407 | 25-29 |
CGCGAAA | 240 | 0.0 | 22.353529 | 90-94 |
GCCCCAA | 1095 | 0.0 | 21.850828 | 145 |
TGACGAC | 420 | 0.0 | 20.367743 | 40-44 |
CGGCGGT | 470 | 0.0 | 20.051907 | 35-39 |