FastQCFastQC Report
Sun 19 Mar 2023
SRR4895702_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895702_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1033643
Sequences flagged as poor quality0
Sequence length151
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAATCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG234152.265288886008032No Hit
CCTAATCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC58490.5658626817963263No Hit
CCTAATCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGT24380.23586480051623238No Hit
CCTAATCCATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCG23530.227641458414559No Hit
CCTAATCCCATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGC20110.19455459960547308No Hit
CCTAATCCGTGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG16280.15750118754734468No Hit
CCTAATCCTATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC14100.1364107336865823No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTAATC1035500.0143.972721
CTAATCC1035800.0143.931022
TAATCCG346200.0143.883243
AATCCGA94150.0142.781974
AATCCGT128550.0142.778724
TAATCCA329050.0142.659353
ATCCATG91450.0142.502435
AATCCTG115950.0142.371434
TAATCCT326050.0142.357273
ATCCGTA36350.0142.253375
ATCCGAT32000.0141.532915
AATCCAG98550.0141.383364
AATCCGG122500.0141.176014
AATCCAT153800.0141.142564
ATCCGTG46300.0140.966345
ATCCGAG34500.0140.68375
ATCCAGT33850.0140.615465
ATCCTAG33200.0140.544565
ATCCGGA31100.0140.527085
ATCCGGT41550.0140.071675