Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895684_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 674643 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 15027 | 2.227400269475856 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2396 | 0.3551507982740501 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 2283 | 0.338401198856284 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCGGGCGCAGTGGCTCAT | 1070 | 0.1586024015664581 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 894 | 0.13251452990692855 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT | 788 | 0.1168025162938028 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 785 | 0.11635783666324265 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCCTTTCCGGCGGTGACGACC | 775 | 0.11487557122804208 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 767 | 0.11368975887988166 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 18620 | 0.0 | 90.2653 | 1 |
GGTATCA | 19150 | 0.0 | 87.94337 | 8 |
AGTGGTA | 19135 | 0.0 | 87.63994 | 5 |
GTGGTAT | 19160 | 0.0 | 87.48125 | 6 |
GTATCAA | 19290 | 0.0 | 87.41786 | 9 |
CAGTGGT | 19300 | 0.0 | 86.890686 | 4 |
AGCAGTG | 19335 | 0.0 | 86.73339 | 2 |
TGGTATC | 19390 | 0.0 | 86.48096 | 7 |
GCAGTGG | 19890 | 0.0 | 84.240326 | 3 |
GCCCCAA | 595 | 0.0 | 40.211647 | 145 |
CGATAGG | 145 | 0.0 | 28.001503 | 35-39 |
TCCCGTA | 105 | 0.00770524 | 27.620121 | 145 |
CGGTCTG | 265 | 1.8189894E-11 | 27.359554 | 145 |
TGCGATA | 155 | 0.0 | 26.19573 | 30-34 |
TACGCAC | 315 | 0.0 | 25.776869 | 50-54 |
TGCGGCT | 655 | 0.0 | 25.459003 | 145 |
CGGTCCG | 210 | 1.5536261E-5 | 24.167606 | 145 |
CGACCTA | 335 | 0.0 | 23.805128 | 45-49 |
CATGGGG | 5030 | 0.0 | 23.40777 | 25-29 |
AGGTATC | 280 | 2.3410757E-7 | 23.30275 | 7 |