Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895676_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 474548 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 35 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTTCACATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT | 11998 | 2.5283006144794626 | No Hit |
TCTTCACATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCGT | 2048 | 0.4315685662988781 | No Hit |
TCTTCACATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTT | 1429 | 0.30112865294975427 | No Hit |
TCTTCACATGTACTCTGCGTTGATACCACTGCTCCCCATGTACTCTGCGT | 763 | 0.16078457816701366 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTCACA | 47630 | 0.0 | 143.67824 | 2 |
TCTTCAC | 47635 | 0.0 | 143.66316 | 1 |
TTCACAG | 15440 | 0.0 | 143.00896 | 3 |
TCACATG | 8705 | 0.0 | 142.9807 | 4 |
CACATGT | 5105 | 0.0 | 142.81071 | 5 |
TTCACAT | 18700 | 0.0 | 142.79648 | 3 |
TCACAGA | 4270 | 0.0 | 142.19673 | 4 |
TCACAGT | 5865 | 0.0 | 142.01015 | 4 |
TCACATA | 4630 | 0.0 | 141.26407 | 4 |
TCACAAG | 4520 | 0.0 | 141.19205 | 4 |
TCACATT | 5280 | 0.0 | 141.08206 | 4 |
TCACAGG | 5300 | 0.0 | 140.95786 | 4 |
ACATGTA | 4005 | 0.0 | 140.80226 | 6 |
TTCACAA | 12990 | 0.0 | 140.55942 | 3 |
CACAGTG | 2085 | 0.0 | 140.07297 | 5 |
CACATTG | 1780 | 0.0 | 139.76697 | 5 |
CACATAG | 1680 | 0.0 | 139.5017 | 5 |
TCACAAT | 4595 | 0.0 | 138.8875 | 4 |
CACAGAT | 1445 | 0.0 | 138.73381 | 5 |
CACATGG | 1885 | 0.0 | 138.48495 | 5 |