FastQCFastQC Report
Sun 19 Mar 2023
SRR4895676_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895676_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474548
Sequences flagged as poor quality0
Sequence length151
%GC35

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTCACATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT119982.5283006144794626No Hit
TCTTCACATGTACTCTGCGTTGATACCACTGCTTCCCACGTACTCTGCGT20480.4315685662988781No Hit
TCTTCACATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTT14290.30112865294975427No Hit
TCTTCACATGTACTCTGCGTTGATACCACTGCTCCCCATGTACTCTGCGT7630.16078457816701366No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCACA476300.0143.678242
TCTTCAC476350.0143.663161
TTCACAG154400.0143.008963
TCACATG87050.0142.98074
CACATGT51050.0142.810715
TTCACAT187000.0142.796483
TCACAGA42700.0142.196734
TCACAGT58650.0142.010154
TCACATA46300.0141.264074
TCACAAG45200.0141.192054
TCACATT52800.0141.082064
TCACAGG53000.0140.957864
ACATGTA40050.0140.802266
TTCACAA129900.0140.559423
CACAGTG20850.0140.072975
CACATTG17800.0139.766975
CACATAG16800.0139.50175
TCACAAT45950.0138.88754
CACAGAT14450.0138.733815
CACATGG18850.0138.484955