Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895666_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1172779 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 13720 | 1.169870879338733 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4032 | 0.3437987890301583 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 2045 | 0.17437215366236947 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1841 | 0.15697757207453408 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 1809 | 0.1542490102568344 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1326 | 0.11306478032093004 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 1225 | 0.10445275708381545 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 22430 | 0.0 | 99.19473 | 1 |
GTGGTAT | 22355 | 0.0 | 99.1708 | 6 |
GGTATCA | 22545 | 0.0 | 98.946014 | 8 |
GTATCAA | 22645 | 0.0 | 98.24876 | 9 |
AGTGGTA | 22590 | 0.0 | 98.143326 | 5 |
TGGTATC | 22830 | 0.0 | 97.10745 | 7 |
AGCAGTG | 22940 | 0.0 | 96.930374 | 2 |
CAGTGGT | 22925 | 0.0 | 96.77243 | 4 |
GCAGTGG | 23500 | 0.0 | 94.25033 | 3 |
GGTCTGA | 675 | 0.0 | 32.220963 | 145 |
CGGTCTG | 385 | 0.0 | 30.128695 | 145 |
GAGGTAT | 355 | 5.456968E-12 | 26.548258 | 6 |
CGGAGCC | 560 | 0.0 | 24.597252 | 145 |
CGACCTA | 450 | 0.0 | 24.487932 | 45-49 |
CATGGGG | 7050 | 0.0 | 23.715078 | 25-29 |
TACGCAC | 490 | 0.0 | 23.672747 | 50-54 |
CGCTGTT | 620 | 0.0 | 23.386183 | 145 |
CGATAGG | 105 | 0.0 | 22.096258 | 35-39 |
TGCGGCT | 920 | 0.0 | 22.064354 | 145 |
CGCGAAA | 300 | 0.0 | 21.74915 | 90-94 |