Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895622_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 442886 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 13745 | 3.1035074488694607 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGA | 1905 | 0.43013326228419957 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1779 | 0.4016835032039848 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 739 | 0.16686009492284695 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 730 | 0.1648279692742602 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 673 | 0.15195784016654398 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 452 | 0.1020578659068022 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 14605 | 0.0 | 77.53622 | 1 |
GTATCAA | 14875 | 0.0 | 76.031364 | 9 |
AGTGGTA | 14915 | 0.0 | 75.73879 | 5 |
GGTATCA | 14945 | 0.0 | 75.73231 | 8 |
GTGGTAT | 14965 | 0.0 | 75.43729 | 6 |
CAGTGGT | 15030 | 0.0 | 75.20753 | 4 |
AGCAGTG | 15060 | 0.0 | 75.15401 | 2 |
TGGTATC | 15095 | 0.0 | 74.83565 | 7 |
GCAGTGG | 15395 | 0.0 | 73.236046 | 3 |
CGGTCTG | 145 | 0.0 | 55.00458 | 145 |
CCGCAAG | 480 | 0.0 | 45.316277 | 145 |
CGCCGAA | 65 | 7.329128E-4 | 44.619102 | 145 |
CGCTGTT | 225 | 2.0008883E-11 | 35.447395 | 145 |
CGGAGCC | 200 | 3.245059E-7 | 29.002417 | 145 |
TACGCAC | 140 | 0.0 | 26.927776 | 50-54 |
AACGGCA | 110 | 0.009661953 | 26.365833 | 4 |
CGCGAAA | 110 | 0.0 | 25.044714 | 90-94 |
CATGGGG | 3075 | 0.0 | 23.340773 | 25-29 |
GGTCTGA | 250 | 2.2728036E-6 | 23.201935 | 145 |
CGACCTA | 145 | 0.0 | 22.999317 | 45-49 |