Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895593_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1662872 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 9785 | 0.5884397596447593 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 2028 | 0.121957673230411 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1989 | 0.1196123333605954 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 1854 | 0.1114938491958491 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 26300 | 0.0 | 138.01843 | 8 |
AAGCAGT | 26385 | 0.0 | 137.64833 | 1 |
GTGGTAT | 26570 | 0.0 | 136.4805 | 6 |
GTATCAA | 26705 | 0.0 | 136.08699 | 9 |
TGGTATC | 26790 | 0.0 | 135.54774 | 7 |
AGTGGTA | 26980 | 0.0 | 134.43317 | 5 |
AGCAGTG | 27175 | 0.0 | 133.46129 | 2 |
CAGTGGT | 27270 | 0.0 | 133.10909 | 4 |
GCAGTGG | 27655 | 0.0 | 131.19691 | 3 |
ATCAACG | 26255 | 0.0 | 28.221123 | 10-14 |
TCAACGC | 26405 | 0.0 | 28.126215 | 10-14 |
AGAGTAC | 26475 | 0.0 | 27.938696 | 15-19 |
CAGAGTA | 26580 | 0.0 | 27.844574 | 15-19 |
TACATGG | 26655 | 0.0 | 27.805481 | 20-24 |
GTACATG | 26805 | 0.0 | 27.63377 | 20-24 |
CAACGCA | 26930 | 0.0 | 27.620653 | 10-14 |
GCAGAGT | 26905 | 0.0 | 27.454727 | 15-19 |
AGTACAT | 26920 | 0.0 | 27.446196 | 20-24 |
CGCAGAG | 27145 | 0.0 | 27.233198 | 15-19 |
GAGTACA | 26645 | 0.0 | 27.189138 | 20-24 |