FastQCFastQC Report
Sat 18 Mar 2023
SRR4895591_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895591_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences719212
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA31030.431444414164391No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC16530.22983487483523635No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG15160.2107862493951714No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT13390.18617598149085388No Hit
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC10460.145436950440204No Hit
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA8620.1198533951046423No Hit
GTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCT8480.1179068202421539No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC7820.10873011017613722No Hit
CTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCA7610.10581024788240465No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGACAACCTTAGCCAAACCAT7460.10372463195830993No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCGCAATAGATATAGTACC7200.10010956435654576No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT141700.0138.61391
GGTATCA141950.0138.534138
GTGGTAT142400.0137.995256
TGGTATC143000.0137.516927
GTATCAA142950.0137.413979
AGCAGTG144050.0136.552522
CAGTGGT144750.0135.854374
AGTGGTA144700.0135.851565
GCAGTGG149100.0131.92753
TCAACGC141500.028.27311110-14
ATCAACG141400.028.2320210-14
AGAGTAC142650.027.99472215-19
TACATGG142350.027.98682220-24
GTACATG142700.027.92826720-24
CAACGCA143300.027.92801710-14
CAGAGTA143700.027.80018615-19
AGTACAT143600.027.75323120-24
CGCAGAG144650.027.60765515-19
GCAGAGT144700.027.58816515-19
GAGTACA142850.027.43530320-24