Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895589_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1886453 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 8505 | 0.4508461117239603 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 5777 | 0.3062360949358399 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 5349 | 0.283548013123041 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGATAGGGAGGAATGGAGAGT | 2192 | 0.11619690498517589 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 2191 | 0.11614389544823008 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 1980 | 0.10495888315266799 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 39195 | 0.0 | 138.30702 | 1 |
GTGGTAT | 39335 | 0.0 | 137.83316 | 6 |
GGTATCA | 39380 | 0.0 | 137.71222 | 8 |
TGGTATC | 39545 | 0.0 | 137.17401 | 7 |
GTATCAA | 39635 | 0.0 | 136.917 | 9 |
CAGTGGT | 39940 | 0.0 | 135.81738 | 4 |
AGTGGTA | 40060 | 0.0 | 135.30275 | 5 |
AGCAGTG | 40220 | 0.0 | 134.69278 | 2 |
GCAGTGG | 40520 | 0.0 | 133.7311 | 3 |
ATCAACG | 39340 | 0.0 | 28.090021 | 10-14 |
TCAACGC | 39500 | 0.0 | 28.07463 | 10-14 |
AGAGTAC | 39635 | 0.0 | 27.902742 | 15-19 |
CAGAGTA | 39765 | 0.0 | 27.800663 | 15-19 |
TACATGG | 39730 | 0.0 | 27.779877 | 20-24 |
GTACATG | 39730 | 0.0 | 27.77263 | 20-24 |
AGTACAT | 40000 | 0.0 | 27.545574 | 20-24 |
CAACGCA | 40335 | 0.0 | 27.52556 | 10-14 |
GCAGAGT | 40210 | 0.0 | 27.464355 | 15-19 |
GAGTACA | 39600 | 0.0 | 27.31118 | 20-24 |
CGCAGAG | 40575 | 0.0 | 27.213749 | 15-19 |