Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895579_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2614333 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 11476 | 0.4389647378509165 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 5379 | 0.2057503768647682 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 5084 | 0.19446642795695882 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 3097 | 0.11846233819486653 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGTTTCTTGCTGCAGCAACG | 2807 | 0.10736964265837597 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 2805 | 0.10729314130984843 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGCCTTCCTAGATCCCCTC | 2658 | 0.10167029219307563 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 46055 | 0.0 | 138.0538 | 1 |
GGTATCA | 46150 | 0.0 | 137.69078 | 8 |
GTGGTAT | 46305 | 0.0 | 137.24544 | 6 |
TGGTATC | 46650 | 0.0 | 136.29214 | 7 |
GTATCAA | 46640 | 0.0 | 136.22878 | 9 |
AGCAGTG | 47120 | 0.0 | 134.9488 | 2 |
CAGTGGT | 47230 | 0.0 | 134.64891 | 4 |
AGTGGTA | 47290 | 0.0 | 134.35632 | 5 |
GCAGTGG | 48305 | 0.0 | 131.59357 | 3 |
TCAACGC | 46045 | 0.0 | 28.160538 | 10-14 |
ATCAACG | 46075 | 0.0 | 28.079721 | 10-14 |
AGAGTAC | 46605 | 0.0 | 27.819717 | 15-19 |
TACATGG | 46560 | 0.0 | 27.811838 | 20-24 |
GTACATG | 46670 | 0.0 | 27.712349 | 20-24 |
CAGAGTA | 46790 | 0.0 | 27.706646 | 15-19 |
CAACGCA | 47235 | 0.0 | 27.512033 | 10-14 |
AGTACAT | 47035 | 0.0 | 27.47587 | 20-24 |
GCAGAGT | 47285 | 0.0 | 27.36789 | 15-19 |
GAGTACA | 46490 | 0.0 | 27.252909 | 20-24 |
CGCAGAG | 47660 | 0.0 | 27.155573 | 15-19 |