Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895570_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1727450 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7309 | 0.4231092072129439 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 3065 | 0.1774291585863556 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 2565 | 0.14848476077455208 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 2259 | 0.13077078931372832 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 2053 | 0.11884569741526527 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCCGGGTGCAGTGGCTCA | 1857 | 0.10749949347303829 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 31435 | 0.0 | 138.53014 | 1 |
GTGGTAT | 31640 | 0.0 | 137.4523 | 6 |
GGTATCA | 31625 | 0.0 | 137.44922 | 8 |
TGGTATC | 31845 | 0.0 | 136.59006 | 7 |
GTATCAA | 31855 | 0.0 | 136.4568 | 9 |
AGTGGTA | 32045 | 0.0 | 135.80493 | 5 |
AGCAGTG | 32255 | 0.0 | 134.98605 | 2 |
CAGTGGT | 32300 | 0.0 | 134.91104 | 4 |
GCAGTGG | 33510 | 0.0 | 129.97359 | 3 |
TCAACGC | 31630 | 0.0 | 28.14078 | 10-14 |
ATCAACG | 31610 | 0.0 | 28.049303 | 10-14 |
AGAGTAC | 31835 | 0.0 | 27.865108 | 15-19 |
TACATGG | 31890 | 0.0 | 27.79576 | 20-24 |
CAGAGTA | 31895 | 0.0 | 27.790125 | 15-19 |
GTACATG | 32115 | 0.0 | 27.609987 | 20-24 |
GCAGAGT | 32300 | 0.0 | 27.450584 | 15-19 |
CAACGCA | 32660 | 0.0 | 27.292969 | 10-14 |
AGTACAT | 32415 | 0.0 | 27.287836 | 20-24 |
GAGTACA | 31760 | 0.0 | 27.247719 | 20-24 |
ACATGGG | 32345 | 0.0 | 27.164402 | 20-24 |