Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895563_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1105555 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 6062 | 0.5483218835788359 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 4359 | 0.3942816051666358 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4251 | 0.3845127560365608 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 3290 | 0.2975880892402459 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGACAACCTTAGCCAAACCAT | 2315 | 0.2093970901492915 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGCGGGGAGGTAGTGACGAAAA | 1942 | 0.17565837972782902 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCTAAACCTAGCCCCAAACC | 1648 | 0.14906540154040276 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 1297 | 0.11731664186765924 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 26475 | 0.0 | 136.99643 | 1 |
GGTATCA | 26720 | 0.0 | 135.77197 | 8 |
GTGGTAT | 26750 | 0.0 | 135.59279 | 6 |
GTATCAA | 26825 | 0.0 | 135.16005 | 9 |
TGGTATC | 26925 | 0.0 | 134.84515 | 7 |
AGTGGTA | 27025 | 0.0 | 134.21306 | 5 |
AGCAGTG | 27145 | 0.0 | 133.61505 | 2 |
CAGTGGT | 27280 | 0.0 | 133.11678 | 4 |
GCAGTGG | 27765 | 0.0 | 130.57953 | 3 |
ATCAACG | 26690 | 0.0 | 27.740374 | 10-14 |
TCAACGC | 26800 | 0.0 | 27.717813 | 10-14 |
AGAGTAC | 26895 | 0.0 | 27.53963 | 15-19 |
CAGAGTA | 26930 | 0.0 | 27.466427 | 15-19 |
TACATGG | 27005 | 0.0 | 27.417416 | 20-24 |
CAACGCA | 27145 | 0.0 | 27.38144 | 10-14 |
GTACATG | 27155 | 0.0 | 27.228855 | 20-24 |
GCAGAGT | 27340 | 0.0 | 27.054531 | 15-19 |
AACGCAG | 27470 | 0.0 | 27.036531 | 10-14 |
CGCAGAG | 27350 | 0.0 | 27.018326 | 15-19 |
AGTACAT | 27350 | 0.0 | 26.971554 | 20-24 |