Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895551_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1516540 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 10198 | 0.6724517652023685 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 4809 | 0.3171034064383399 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 4489 | 0.29600274308623575 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 2557 | 0.16860748809790707 | No Hit |
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA | 2019 | 0.133131997837182 | No Hit |
GTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCT | 2008 | 0.13240666253445343 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT | 1925 | 0.1269336779775014 | No Hit |
GGTGGTCACTGCGTGGCCCTGTGTACCCGAGGAGGCTACTGGCGTCGAGC | 1920 | 0.12660398011262478 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA | 1916 | 0.1263402218207235 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCCGGGCGCAGTGGCTCA | 1872 | 0.12343888060980918 | No Hit |
CTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCA | 1677 | 0.1105806638796207 | No Hit |
TGGAACTTTGCGTACTGGGCTGCTCACCAGCCCTGGTCCCGCGGTGGTCA | 1648 | 0.10866841626333629 | No Hit |
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1571 | 0.10359106914423623 | No Hit |
AGCCGCTGGAACTTTGCGTACTGGGCTGCTCACCAGCCCTGGTCCCGCGG | 1548 | 0.10207445896580374 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 21555 | 0.0 | 137.47469 | 8 |
AAGCAGT | 21645 | 0.0 | 137.14946 | 1 |
GTGGTAT | 21635 | 0.0 | 136.99962 | 6 |
GTATCAA | 21715 | 0.0 | 136.69383 | 9 |
TGGTATC | 21925 | 0.0 | 135.08904 | 7 |
CAGTGGT | 22135 | 0.0 | 133.90498 | 4 |
AGTGGTA | 22150 | 0.0 | 133.84682 | 5 |
AGCAGTG | 22300 | 0.0 | 132.86278 | 2 |
GCAGTGG | 23160 | 0.0 | 127.987144 | 3 |
TCGTACG | 70 | 0.0 | 28.801529 | 50-54 |
ATCAACG | 21465 | 0.0 | 28.193817 | 10-14 |
TCAACGC | 21570 | 0.0 | 28.06325 | 10-14 |
AGAGTAC | 21550 | 0.0 | 28.043076 | 15-19 |
TACATGG | 21390 | 0.0 | 27.911188 | 20-24 |
GTACATG | 21555 | 0.0 | 27.851181 | 20-24 |
CAGAGTA | 21765 | 0.0 | 27.746216 | 15-19 |
CAACGCA | 21980 | 0.0 | 27.605284 | 10-14 |
AGTACAT | 21850 | 0.0 | 27.593786 | 20-24 |
GAGTACA | 21515 | 0.0 | 27.46792 | 20-24 |
GCAGAGT | 22160 | 0.0 | 27.180166 | 15-19 |