Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895550_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1567655 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12342 | 0.7872905709483272 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCTGGGCGCAGTGGCTCA | 4165 | 0.2656834571382096 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 3417 | 0.21796887708073523 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 3202 | 0.20425412479148794 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCAGGCGTGGTGGCTCAT | 3099 | 0.19768380160175547 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCGGGCGCAGTGGCTCAT | 2493 | 0.15902733700973748 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT | 2007 | 0.1280256178814854 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 1989 | 0.1268774060619205 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA | 1926 | 0.1228586646934434 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC | 1794 | 0.11443844468330086 | No Hit |
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA | 1571 | 0.10021337602980247 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 22080 | 0.0 | 137.50581 | 8 |
GTGGTAT | 22210 | 0.0 | 136.79822 | 6 |
AAGCAGT | 22335 | 0.0 | 136.35931 | 1 |
TGGTATC | 22290 | 0.0 | 136.21033 | 7 |
GTATCAA | 22350 | 0.0 | 136.10237 | 9 |
AGTGGTA | 22715 | 0.0 | 133.8203 | 5 |
CAGTGGT | 22790 | 0.0 | 133.37991 | 4 |
AGCAGTG | 23050 | 0.0 | 131.97333 | 2 |
GCAGTGG | 24730 | 0.0 | 122.86232 | 3 |
ATCAACG | 22105 | 0.0 | 28.108444 | 10-14 |
AGAGTAC | 22125 | 0.0 | 27.953585 | 15-19 |
TCAACGC | 22275 | 0.0 | 27.932709 | 10-14 |
TACATGG | 22060 | 0.0 | 27.82813 | 20-24 |
CAGAGTA | 22270 | 0.0 | 27.784512 | 15-19 |
CAACGCA | 22420 | 0.0 | 27.771326 | 10-14 |
GTACATG | 22190 | 0.0 | 27.768936 | 20-24 |
AGTACAT | 22525 | 0.0 | 27.464628 | 20-24 |
CGCAGAG | 22570 | 0.0 | 27.45986 | 15-19 |
GAGTACA | 22200 | 0.0 | 27.243979 | 20-24 |
GCAGAGT | 22820 | 0.0 | 27.114859 | 15-19 |