FastQCFastQC Report
Sat 18 Mar 2023
SRR4895550_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895550_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1567655
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA123420.7872905709483272No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCTGGGCGCAGTGGCTCA41650.2656834571382096No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG34170.21796887708073523No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC32020.20425412479148794No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCAGGCGTGGTGGCTCAT30990.19768380160175547No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCGGGCGCAGTGGCTCAT24930.15902733700973748No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT20070.1280256178814854No Hit
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC19890.1268774060619205No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA19260.1228586646934434No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC17940.11443844468330086No Hit
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA15710.10021337602980247No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA220800.0137.505818
GTGGTAT222100.0136.798226
AAGCAGT223350.0136.359311
TGGTATC222900.0136.210337
GTATCAA223500.0136.102379
AGTGGTA227150.0133.82035
CAGTGGT227900.0133.379914
AGCAGTG230500.0131.973332
GCAGTGG247300.0122.862323
ATCAACG221050.028.10844410-14
AGAGTAC221250.027.95358515-19
TCAACGC222750.027.93270910-14
TACATGG220600.027.8281320-24
CAGAGTA222700.027.78451215-19
CAACGCA224200.027.77132610-14
GTACATG221900.027.76893620-24
AGTACAT225250.027.46462820-24
CGCAGAG225700.027.4598615-19
GAGTACA222000.027.24397920-24
GCAGAGT228200.027.11485915-19