Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895549_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2147659 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 12618 | 0.587523438311203 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 4308 | 0.20059050342722007 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 4290 | 0.19975238154660493 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 3787 | 0.17633153121608225 | No Hit |
GTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCT | 2931 | 0.13647417956016294 | No Hit |
GGTGGTCACTGCGTGGCCCTGTGTACCCGAGGAGGCTACTGGCGTCGAGC | 2920 | 0.1359619939664537 | No Hit |
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA | 2907 | 0.13535668371934279 | No Hit |
CTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCA | 2448 | 0.11398457576365709 | No Hit |
AGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCAGTT | 2302 | 0.1071864760653344 | No Hit |
AAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCAGTTCA | 2266 | 0.10551023230410414 | No Hit |
TGGAACTTTGCGTACTGGGCTGCTCACCAGCCCTGGTCCCGCGGTGGTCA | 2223 | 0.103508052255968 | No Hit |
GAGCCCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGT | 2205 | 0.1026699303753529 | No Hit |
AGCCGCTGGAACTTTGCGTACTGGGCTGCTCACCAGCCCTGGTCCCGCGG | 2157 | 0.10043493869371255 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 27210 | 0.0 | 136.29224 | 8 |
GTGGTAT | 27325 | 0.0 | 135.71864 | 6 |
AAGCAGT | 27435 | 0.0 | 135.60384 | 1 |
TGGTATC | 27410 | 0.0 | 135.2715 | 7 |
GTATCAA | 27535 | 0.0 | 134.97118 | 9 |
AGTGGTA | 28015 | 0.0 | 132.42734 | 5 |
AGCAGTG | 28235 | 0.0 | 131.50668 | 2 |
CAGTGGT | 28235 | 0.0 | 131.4465 | 4 |
GCAGTGG | 28815 | 0.0 | 128.73174 | 3 |
ATCAACG | 27095 | 0.0 | 28.086264 | 10-14 |
TCAACGC | 27200 | 0.0 | 28.009607 | 10-14 |
AGAGTAC | 27145 | 0.0 | 27.992226 | 15-19 |
CAGAGTA | 27230 | 0.0 | 27.899557 | 15-19 |
CAACGCA | 27525 | 0.0 | 27.720734 | 10-14 |
TACATGG | 27190 | 0.0 | 27.703579 | 20-24 |
GTACATG | 27305 | 0.0 | 27.634365 | 20-24 |
AGTACAT | 27640 | 0.0 | 27.37237 | 20-24 |
GAGTACA | 27225 | 0.0 | 27.170774 | 20-24 |
CGCAGAG | 27995 | 0.0 | 27.142307 | 15-19 |
GCAGAGT | 28090 | 0.0 | 27.004377 | 15-19 |