FastQCFastQC Report
Sat 18 Mar 2023
SRR4895533_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895533_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3774381
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA268230.710659575702612No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG97420.2581085481301437No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC94710.25092856285573717No Hit
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC58950.1561845505262982No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCGGGCGCGGTGGCTCAC47920.1269612156271452No Hit
GTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCT47130.12486815718921856No Hit
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA46300.12266912110886527No Hit
GGTGGTCACTGCGTGGCCCTGTGTACCCGAGGAGGCTACTGGCGTCGAGC44850.11882743157089866No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCGGGCACGGTGGCTCACG44460.11779414955723866No Hit
CTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCA39180.10380510075691882No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA586300.0137.657328
GTGGTAT587300.0137.5216
AAGCAGT589050.0137.449721
TGGTATC590150.0136.722677
GTATCAA596500.0135.605169
AGTGGTA600350.0134.555665
AGCAGTG602750.0133.991152
CAGTGGT605350.0133.515624
GCAGTGG615150.0131.24343
ATCAACG585150.028.15155610-14
TCAACGC586400.028.14802410-14
AGAGTAC589150.027.99249515-19
CAGAGTA591350.027.88104815-19
TACATGG585950.027.86878220-24
GTACATG587550.027.82229820-24
CAACGCA598550.027.6969310-14
AGTACAT595800.027.5603120-24
GCAGAGT599250.027.41977515-19
GAGTACA587500.027.37856920-24
CGCAGAG603250.027.31434215-19