Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895533_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3774381 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 26823 | 0.710659575702612 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 9742 | 0.2581085481301437 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 9471 | 0.25092856285573717 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 5895 | 0.1561845505262982 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCGGGCGCGGTGGCTCAC | 4792 | 0.1269612156271452 | No Hit |
GTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCT | 4713 | 0.12486815718921856 | No Hit |
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA | 4630 | 0.12266912110886527 | No Hit |
GGTGGTCACTGCGTGGCCCTGTGTACCCGAGGAGGCTACTGGCGTCGAGC | 4485 | 0.11882743157089866 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCGGGCACGGTGGCTCACG | 4446 | 0.11779414955723866 | No Hit |
CTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCA | 3918 | 0.10380510075691882 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 58630 | 0.0 | 137.65732 | 8 |
GTGGTAT | 58730 | 0.0 | 137.521 | 6 |
AAGCAGT | 58905 | 0.0 | 137.44972 | 1 |
TGGTATC | 59015 | 0.0 | 136.72267 | 7 |
GTATCAA | 59650 | 0.0 | 135.60516 | 9 |
AGTGGTA | 60035 | 0.0 | 134.55566 | 5 |
AGCAGTG | 60275 | 0.0 | 133.99115 | 2 |
CAGTGGT | 60535 | 0.0 | 133.51562 | 4 |
GCAGTGG | 61515 | 0.0 | 131.2434 | 3 |
ATCAACG | 58515 | 0.0 | 28.151556 | 10-14 |
TCAACGC | 58640 | 0.0 | 28.148024 | 10-14 |
AGAGTAC | 58915 | 0.0 | 27.992495 | 15-19 |
CAGAGTA | 59135 | 0.0 | 27.881048 | 15-19 |
TACATGG | 58595 | 0.0 | 27.868782 | 20-24 |
GTACATG | 58755 | 0.0 | 27.822298 | 20-24 |
CAACGCA | 59855 | 0.0 | 27.69693 | 10-14 |
AGTACAT | 59580 | 0.0 | 27.56031 | 20-24 |
GCAGAGT | 59925 | 0.0 | 27.419775 | 15-19 |
GAGTACA | 58750 | 0.0 | 27.378569 | 20-24 |
CGCAGAG | 60325 | 0.0 | 27.314342 | 15-19 |