Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895531_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1079637 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 5452 | 0.5049845457315746 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 2350 | 0.21766575247050632 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1984 | 0.18376546931978063 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 1757 | 0.1627398838683743 | No Hit |
GGTGGTCACTGCGTGGCCCTGTGTACCCGAGGAGGCTACTGGCGTCGAGC | 1431 | 0.13254454969587 | No Hit |
CCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCA | 1431 | 0.13254454969587 | No Hit |
GTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCT | 1428 | 0.1322666785225034 | No Hit |
TGGAACTTTGCGTACTGGGCTGCTCACCAGCCCTGGTCCCGCGGTGGTCA | 1194 | 0.1105927269999083 | No Hit |
CTCAGAAGACTTCCTTTCATCTGTTCCTACTGAGCTGGTCCCAGCCAGCA | 1175 | 0.10883287623525316 | No Hit |
AGCCGCTGGAACTTTGCGTACTGGGCTGCTCACCAGCCCTGGTCCCGCGG | 1106 | 0.10244183924782126 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 13560 | 0.0 | 135.34178 | 8 |
GTGGTAT | 13585 | 0.0 | 134.98672 | 6 |
AAGCAGT | 13730 | 0.0 | 134.05173 | 1 |
TGGTATC | 13700 | 0.0 | 133.8536 | 7 |
GTATCAA | 13805 | 0.0 | 133.51353 | 9 |
AGTGGTA | 13920 | 0.0 | 131.68639 | 5 |
CAGTGGT | 14155 | 0.0 | 129.70361 | 4 |
AGCAGTG | 14275 | 0.0 | 128.47981 | 2 |
GCAGTGG | 14435 | 0.0 | 126.955956 | 3 |
AGAGTAC | 13685 | 0.0 | 27.620798 | 15-19 |
ATCAACG | 13650 | 0.0 | 27.57558 | 10-14 |
TCAACGC | 13735 | 0.0 | 27.4888 | 10-14 |
CAGAGTA | 13705 | 0.0 | 27.485931 | 15-19 |
TACATGG | 13670 | 0.0 | 27.29296 | 20-24 |
GTACATG | 13700 | 0.0 | 27.254213 | 20-24 |
CAACGCA | 13955 | 0.0 | 27.18958 | 10-14 |
AGTACAT | 13825 | 0.0 | 27.101534 | 20-24 |
CGCAGAG | 14075 | 0.0 | 26.742926 | 15-19 |
GAGTACA | 13700 | 0.0 | 26.707659 | 20-24 |
AACGCAG | 14280 | 0.0 | 26.651442 | 10-14 |