FastQCFastQC Report
Sat 18 Mar 2023
SRR4895515_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895515_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2880971
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG188450.6541197394906093No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA151510.5258990805530497No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC129760.4504037006967443No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGGCCGGGCGCGGTGGCTCAC42230.14658252373939204No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGCCGGGCGCGGTGGCTCACG36010.12499258062646239No Hit
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC34030.11811989777057805No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT32340.11225381997944445No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGTTTCTTGCTGCAGCAACGC31220.10836624179833812No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA409050.0137.85498
AAGCAGT413350.0136.758911
GTGGTAT413600.0136.407996
TGGTATC415350.0135.746617
GTATCAA417150.0135.437019
CAGTGGT425150.0132.685294
AGTGGTA430100.0131.241915
AGCAGTG430050.0131.163542
GCAGTGG438500.0128.619583
ATCAACG409750.028.08265310-14
TCAACGC410800.028.05293510-14
AGAGTAC410700.028.04223415-19
CAGAGTA412950.027.88944215-19
TACATGG412400.027.75554820-24
GTACATG413150.027.73304420-24
CAACGCA417700.027.7205310-14
AGTACAT417700.027.5205820-24
GAGTACA410650.027.40745220-24
CGCAGAG422900.027.19240415-19
GCAGAGT423100.027.13190315-19