FastQCFastQC Report
Sat 18 Mar 2023
SRR4895479_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895479_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2846598
Sequences flagged as poor quality0
Sequence length150
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA244640.8594118312455781No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG48830.17153809564961403No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC39780.1397457596752334No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT30140.10588077417324118No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA393450.0136.676538
AAGCAGT395900.0136.170361
GTGGTAT396850.0135.541826
TGGTATC399100.0134.903927
GTATCAA399100.0134.777689
AGTGGTA402400.0133.708185
CAGTGGT406400.0132.551534
AGCAGTG409200.0131.638922
GCAGTGG418100.0128.785083
ATCAACG392900.027.98903710-14
TCAACGC394100.027.96225210-14
AGAGTAC396000.027.75597415-19
CAGAGTA398250.027.59554715-19
TACATGG398150.027.52874420-24
GTACATG400200.027.42730520-24
CAACGCA404050.027.3057210-14
AGTACAT402950.027.21511320-24
GCAGAGT406350.027.01713415-19
GAGTACA396550.027.01535220-24
CGCAGAG409050.026.86343215-19