Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895479_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2846598 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 24464 | 0.8594118312455781 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 4883 | 0.17153809564961403 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 3978 | 0.1397457596752334 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 3014 | 0.10588077417324118 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 39345 | 0.0 | 136.67653 | 8 |
AAGCAGT | 39590 | 0.0 | 136.17036 | 1 |
GTGGTAT | 39685 | 0.0 | 135.54182 | 6 |
TGGTATC | 39910 | 0.0 | 134.90392 | 7 |
GTATCAA | 39910 | 0.0 | 134.77768 | 9 |
AGTGGTA | 40240 | 0.0 | 133.70818 | 5 |
CAGTGGT | 40640 | 0.0 | 132.55153 | 4 |
AGCAGTG | 40920 | 0.0 | 131.63892 | 2 |
GCAGTGG | 41810 | 0.0 | 128.78508 | 3 |
ATCAACG | 39290 | 0.0 | 27.989037 | 10-14 |
TCAACGC | 39410 | 0.0 | 27.962252 | 10-14 |
AGAGTAC | 39600 | 0.0 | 27.755974 | 15-19 |
CAGAGTA | 39825 | 0.0 | 27.595547 | 15-19 |
TACATGG | 39815 | 0.0 | 27.528744 | 20-24 |
GTACATG | 40020 | 0.0 | 27.427305 | 20-24 |
CAACGCA | 40405 | 0.0 | 27.30572 | 10-14 |
AGTACAT | 40295 | 0.0 | 27.215113 | 20-24 |
GCAGAGT | 40635 | 0.0 | 27.017134 | 15-19 |
GAGTACA | 39655 | 0.0 | 27.015352 | 20-24 |
CGCAGAG | 40905 | 0.0 | 26.863432 | 15-19 |