Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895469_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2003185 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 17432 | 0.87021418391212 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 11779 | 0.5880135883605359 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 8182 | 0.40844954410101914 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 2488 | 0.12420220798378583 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATAAACTTCGCCTTAATTTT | 2118 | 0.10573162239134179 | No Hit |
GAGGAGGCTACTGGCGTCGAGCCCACTGCCTCAGAAGACTTCCTTTCATC | 2060 | 0.10283623329847218 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 41280 | 0.0 | 138.9272 | 1 |
GGTATCA | 41405 | 0.0 | 138.37965 | 8 |
GTGGTAT | 41480 | 0.0 | 138.07741 | 6 |
TGGTATC | 41640 | 0.0 | 137.66783 | 7 |
GTATCAA | 41770 | 0.0 | 137.27383 | 9 |
CAGTGGT | 42040 | 0.0 | 136.34085 | 4 |
AGCAGTG | 42355 | 0.0 | 135.3501 | 2 |
AGTGGTA | 42825 | 0.0 | 133.75763 | 5 |
GCAGTGG | 43305 | 0.0 | 132.31435 | 3 |
TCAACGC | 41350 | 0.0 | 28.283638 | 10-14 |
ATCAACG | 41280 | 0.0 | 28.272324 | 10-14 |
CAACGCA | 41720 | 0.0 | 28.043154 | 10-14 |
AGAGTAC | 41485 | 0.0 | 28.02936 | 15-19 |
TACATGG | 41625 | 0.0 | 27.94011 | 20-24 |
CAGAGTA | 41695 | 0.0 | 27.912355 | 15-19 |
GTACATG | 41900 | 0.0 | 27.760168 | 20-24 |
CGCAGAG | 41980 | 0.0 | 27.702288 | 15-19 |
GCAGAGT | 42045 | 0.0 | 27.652613 | 15-19 |
AGTACAT | 42085 | 0.0 | 27.590244 | 20-24 |
GAGTACA | 41505 | 0.0 | 27.47976 | 20-24 |