Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895432_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 825819 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4279 | 0.5181522827641407 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTGGACATTAATT | 2102 | 0.2545351947581734 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGAATTCTGGACATTAATTA | 1989 | 0.2408518089314971 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 1421 | 0.1720716040682038 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGTAGAATCTTAGTTCAACTTT | 1369 | 0.1657748247497333 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 1225 | 0.1483375897139688 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 1157 | 0.1401033398359689 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGACTGAAAAAAAAAAAAAAAA | 1115 | 0.13501747961720426 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCATTGAGGCAGCCAGC | 1104 | 0.13368546860752778 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGAATTCTCTTGCTTCAAC | 833 | 0.10086956100549879 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 26455 | 0.0 | 139.18977 | 1 |
GTGGTAT | 26955 | 0.0 | 136.38594 | 6 |
GGTATCA | 26995 | 0.0 | 136.13051 | 8 |
AGTGGTA | 27025 | 0.0 | 136.03267 | 5 |
GTATCAA | 27110 | 0.0 | 135.97798 | 9 |
AGCAGTG | 27060 | 0.0 | 135.7319 | 2 |
CAGTGGT | 27135 | 0.0 | 135.45468 | 4 |
TGGTATC | 27150 | 0.0 | 135.37985 | 7 |
GCAGTGG | 27535 | 0.0 | 133.33812 | 3 |
CGTTATC | 40 | 0.0062171994 | 54.002728 | 1 |
CGTGGTA | 110 | 2.536918E-4 | 32.726944 | 4 |
ATCAACG | 27015 | 0.0 | 27.904215 | 10-14 |
AGAGTAC | 27030 | 0.0 | 27.819473 | 15-19 |
CAGAGTA | 27070 | 0.0 | 27.778368 | 15-19 |
CAACGCA | 27275 | 0.0 | 27.754366 | 10-14 |
TCAACGC | 27285 | 0.0 | 27.670311 | 10-14 |
TACATGG | 26980 | 0.0 | 27.668215 | 20-24 |
GCAGAGT | 27265 | 0.0 | 27.495192 | 15-19 |
GTACATG | 27205 | 0.0 | 27.465849 | 20-24 |
AACGCAG | 27565 | 0.0 | 27.425806 | 10-14 |