Basic Statistics
Measure | Value |
---|---|
Filename | SRR4895412_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1838500 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 10627 | 0.5780255643187381 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGACTGAAAAAAAAAAAAAAAA | 5119 | 0.2784335055751972 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA | 4252 | 0.23127549632852867 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGAGCTGCCCTCTCCTGGGC | 2443 | 0.13288006527060103 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG | 2402 | 0.13064998640195813 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCATGATCTTGTTACTGT | 2281 | 0.12406853413108512 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGAACAAGCATGATCTTGT | 1935 | 0.10524884416644002 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGATGATCTTGTTACTGTGATA | 1871 | 0.10176774544465596 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGACTTTTTCCAAATGATCCTA | 1870 | 0.1017133532771281 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 89865 | 0.0 | 141.3537 | 1 |
GGTATCA | 91365 | 0.0 | 138.59956 | 8 |
GTGGTAT | 91390 | 0.0 | 138.59315 | 6 |
TGGTATC | 91405 | 0.0 | 138.48378 | 7 |
AGCAGTG | 91550 | 0.0 | 138.39027 | 2 |
AGTGGTA | 91545 | 0.0 | 138.37424 | 5 |
CAGTGGT | 91610 | 0.0 | 138.27605 | 4 |
GTATCAA | 91895 | 0.0 | 138.1606 | 9 |
GCAGTGG | 92500 | 0.0 | 136.89893 | 3 |
GTTGTAT | 1135 | 0.0 | 29.18013 | 6 |
CAACGCA | 91730 | 0.0 | 28.322302 | 10-14 |
ATCAACG | 91365 | 0.0 | 28.307787 | 10-14 |
TCAACGC | 91590 | 0.0 | 28.297989 | 10-14 |
AGAGTAC | 91475 | 0.0 | 28.206364 | 15-19 |
AACGCAG | 92305 | 0.0 | 28.166151 | 10-14 |
CAGAGTA | 91695 | 0.0 | 28.124557 | 15-19 |
TACATGG | 90985 | 0.0 | 28.093605 | 20-24 |
CGCAGAG | 92215 | 0.0 | 28.03311 | 15-19 |
GTACATG | 91395 | 0.0 | 27.98806 | 20-24 |
AGTACAT | 92160 | 0.0 | 27.886992 | 20-24 |