FastQCFastQC Report
Sat 18 Mar 2023
SRR4895412_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4895412_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1838500
Sequences flagged as poor quality0
Sequence length150
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA106270.5780255643187381No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGACTGAAAAAAAAAAAAAAAA51190.2784335055751972No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA42520.23127549632852867No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGAGCTGCCCTCTCCTGGGC24430.13288006527060103No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG24020.13064998640195813No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCATGATCTTGTTACTGT22810.12406853413108512No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGAACAAGCATGATCTTGT19350.10524884416644002No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGATGATCTTGTTACTGTGATA18710.10176774544465596No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGACTTTTTCCAAATGATCCTA18700.1017133532771281No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT898650.0141.35371
GGTATCA913650.0138.599568
GTGGTAT913900.0138.593156
TGGTATC914050.0138.483787
AGCAGTG915500.0138.390272
AGTGGTA915450.0138.374245
CAGTGGT916100.0138.276054
GTATCAA918950.0138.16069
GCAGTGG925000.0136.898933
GTTGTAT11350.029.180136
CAACGCA917300.028.32230210-14
ATCAACG913650.028.30778710-14
TCAACGC915900.028.29798910-14
AGAGTAC914750.028.20636415-19
AACGCAG923050.028.16615110-14
CAGAGTA916950.028.12455715-19
TACATGG909850.028.09360520-24
CGCAGAG922150.028.0331115-19
GTACATG913950.027.9880620-24
AGTACAT921600.027.88699220-24