FastQCFastQC Report
Sat 18 Mar 2023
SRR6792048_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792048_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84213772
Sequences flagged as poor quality0
Sequence length151
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTGATC5336550.0142.541382
ATGCCTA1619550.0139.927571
ACGTGAT2197100.0139.761842
CTGATCA1709650.0139.199863
GCTAACG1673400.0138.90561
CTGATCG1742200.0138.74473
GATAGAC2119450.0138.645951
GTCGTAG1757600.0138.007481
TATCAGC1755900.0137.665421
ACGTATC1247650.0137.494061
AACGTGA2208250.0137.441731
ACTTCGA1393600.0137.382662
CCGTCTA1858900.0136.983662
CTAACGA1593100.0136.896472
GCGAGTA1563000.0136.756031
AGTCACT1165550.0136.747651
GTCACTA1118350.0136.703232
TGCCTAA1580050.0136.552412
AACATCG1882350.0136.461032
TGAGCCA1735850.0136.369162
Produced by FastQC (version 0.11.5)