FastQCFastQC Report
Sat 18 Mar 2023
SRR6792047_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792047_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149032389
Sequences flagged as poor quality0
Sequence length151
%GC39

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGCGAC3091600.0139.87342
ATAGCGA3178300.0138.483871
ACCTTAC4383200.0138.309332
AGTTAGC2339750.0136.489962
ACGTATC1743200.0136.083911
TCACGCA2531200.0135.64962
GTCACTA1617700.0135.568042
GATGTAC3342950.0135.449232
AGTCACT1677600.0135.097981
GATAGAC2383200.0134.661871
CACCTTA4597300.0134.301031
CGAACTT2114400.0133.780121
TATCAGC1660850.0133.587651
TAAGGTC3129550.0132.833482
ACTTCGA1245450.0132.71562
TCTGTCA2368800.0132.370862
TTCACGC2692450.0132.244221
CAAGCTA1676250.0131.923982
CTAAGGT3222950.0131.657671
GACTAGT2131450.0131.643541