FastQCFastQC Report
Sat 18 Mar 2023
SRR6792044_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792044_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123381369
Sequences flagged as poor quality0
Sequence length151
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCTA2371550.0140.825041
GTCACTA2601450.0140.615782
CGAACTT2683650.0139.856461
CAGTTCA2573600.0139.436612
CAAGCTA2173100.0138.664472
TGCCTAA2350000.0138.56012
ACGTATC1460400.0138.477831
GACTAGT2048500.0138.24551
ACTTCGA1495000.0137.506732
AGTCACT2716350.0137.419561
CTAACGA1970050.0137.090292
GAACTTA2695050.0136.946322
ACAAGCT2262250.0136.290651
AGTTAGC1530400.0135.914252
CCAGTTC2701800.0135.326251
AGCTGAA2658350.0134.950332
GCTAACG2056750.0134.925081
CAGATTC1505150.0134.90192
GAGCTGA2744350.0134.158751
ACGTGAT1499750.0133.91212
Produced by FastQC (version 0.11.5)