FastQCFastQC Report
Sat 18 Mar 2023
SRR6792037_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6792037_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104379766
Sequences flagged as poor quality0
Sequence length151
%GC32

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATAGAC5619250.0142.181431
TGGAACA6245400.0139.629241
GACTAGT3133500.0139.598071
CATACCA7159650.0139.553391
AGTTAGC2485500.0139.48722
ATAGACA5726350.0139.187382
GCCACAT4736850.0139.062071
TAGCGAC1656350.0138.217252
TCACGCA2950700.0137.863222
ACTAGTA3167400.0137.860892
ATAGCGA1668250.0137.582811
ATACCAA7241150.0137.235232
GGCTTCA3362150.0136.589742
GGCTAAC1506800.0135.938322
CTTCACA5393900.0135.416092
TAGACAT2082250.0135.386293
TATCAGC1470200.0135.333861
CGCATAC1683300.0135.14231
TAGACAG2081350.0134.845733
GCGAGTA1747550.0134.704511
Produced by FastQC (version 0.11.5)