##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064248_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1589565 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.291608081456246 32.0 32.0 32.0 32.0 32.0 2 31.331771270756466 32.0 32.0 32.0 32.0 32.0 3 31.432016935450893 32.0 32.0 32.0 32.0 32.0 4 31.523565881231658 32.0 32.0 32.0 32.0 32.0 5 31.47489470389698 32.0 32.0 32.0 32.0 32.0 6 35.04895364455055 36.0 36.0 36.0 36.0 36.0 7 35.071190545841155 36.0 36.0 36.0 36.0 36.0 8 35.00795815207305 36.0 36.0 36.0 36.0 36.0 9 35.13200844256133 36.0 36.0 36.0 36.0 36.0 10 34.96780377021386 36.0 36.0 36.0 36.0 36.0 11 35.126125071953645 36.0 36.0 36.0 36.0 36.0 12 35.03211696281687 36.0 36.0 36.0 36.0 36.0 13 35.073298669761854 36.0 36.0 36.0 36.0 36.0 14 35.018114389785886 36.0 36.0 36.0 36.0 36.0 15 34.98533686889181 36.0 36.0 36.0 36.0 36.0 16 35.00470820633318 36.0 36.0 36.0 36.0 36.0 17 34.97007168627895 36.0 36.0 36.0 36.0 36.0 18 34.97083415903093 36.0 36.0 36.0 36.0 36.0 19 34.961237193823465 36.0 36.0 36.0 36.0 36.0 20 34.958889381686184 36.0 36.0 36.0 36.0 36.0 21 34.94732646982036 36.0 36.0 36.0 36.0 36.0 22 34.93368877648916 36.0 36.0 36.0 36.0 36.0 23 34.87836043194207 36.0 36.0 36.0 32.0 36.0 24 34.847949596273196 36.0 36.0 36.0 32.0 36.0 25 34.82133350948215 36.0 36.0 36.0 32.0 36.0 26 34.76920478244048 36.0 36.0 36.0 32.0 36.0 27 34.75485557369469 36.0 36.0 36.0 32.0 36.0 28 34.73540874390164 36.0 36.0 36.0 32.0 36.0 29 34.70520614130281 36.0 36.0 36.0 32.0 36.0 30 34.6839021996584 36.0 36.0 36.0 32.0 36.0 31 34.67705944708143 36.0 36.0 36.0 32.0 36.0 32 34.64424418001151 36.0 36.0 36.0 32.0 36.0 33 34.620593684435676 36.0 36.0 36.0 32.0 36.0 34 34.61470339369576 36.0 36.0 36.0 32.0 36.0 35 34.57829972350926 36.0 36.0 36.0 32.0 36.0 36 34.55429567208639 36.0 36.0 36.0 32.0 36.0 37 34.54237228424129 36.0 36.0 36.0 32.0 36.0 38 34.49669563685662 36.0 36.0 36.0 32.0 36.0 39 34.484465246781355 36.0 36.0 36.0 32.0 36.0 40 34.478110048975665 36.0 36.0 36.0 32.0 36.0 41 34.465852607474375 36.0 36.0 36.0 32.0 36.0 42 34.4137547064763 36.0 36.0 36.0 32.0 36.0 43 34.403271335239516 36.0 36.0 36.0 32.0 36.0 44 34.331629722597064 36.0 36.0 36.0 32.0 36.0 45 34.3064240845766 36.0 36.0 36.0 32.0 36.0 46 34.288105865441175 36.0 36.0 36.0 32.0 36.0 47 34.27080805125931 36.0 36.0 36.0 32.0 36.0 48 34.22107117356006 36.0 36.0 36.0 32.0 36.0 49 34.21099294461063 36.0 36.0 36.0 32.0 36.0 50 33.59952313997855 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 16.0 21 45.0 22 148.0 23 473.0 24 1272.0 25 2941.0 26 5902.0 27 10665.0 28 18145.0 29 28331.0 30 41073.0 31 59481.0 32 86123.0 33 140544.0 34 290209.0 35 904196.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.68617152463546 17.797417416208216 11.689387800298977 26.82702325885734 2 15.730483398833764 20.195501010658944 37.483147820430474 26.59086777007682 3 18.240948286979865 24.01203854397535 28.964412186760995 28.78260098228379 4 12.084375285062265 15.804323824442537 36.28565047670275 35.82565041379245 5 13.987097098891836 37.247800498878625 33.769742036343274 14.995360365886265 6 34.65761930495275 35.89104161463448 16.390689001554517 13.060650078858252 7 30.252301730347607 30.410709848291827 20.811479870278976 18.525508551081586 8 27.808803037308948 34.14437283156084 19.054835756952375 18.99198837417784 9 27.30599565160498 13.730912860982214 18.084844031525865 40.87824745588694 10 15.137394490379963 27.34118588503517 32.530840547652886 24.990579076931983 11 37.72386641871607 20.58432375167027 22.64287565646932 19.048934173144332 12 24.44406139041901 23.321174863044206 29.572889169608775 22.661874576928014 13 29.788576580045156 19.444638418580247 25.20573316246833 25.561051838906263 14 23.001479022850933 19.58959789577387 25.36300857531284 32.04591450606236 15 24.894259134481995 28.04021896207547 22.02914251597516 25.036379387467374 16 25.388772818521936 25.823171671532812 24.244551770214645 24.543503739730603 17 23.882634557253084 26.216040237423442 25.397451504027828 24.503873701295635 18 24.478252499745214 25.294640913660494 26.434137202575304 23.792969384018996 19 25.535870213467344 24.88789378722719 25.256107964196474 24.320128035108997 20 25.64000777578071 24.7732221237318 25.021279594048885 24.56549050643861 21 26.29562175815396 24.54463957120344 24.444738025812093 24.715000644830504 22 25.61370640861671 24.735792164261497 25.002154680248594 24.648346746873198 23 24.37636830317824 24.51936384911548 25.504101764010166 25.60016608369612 24 24.818612984624018 25.022065896347222 25.307428421881067 24.851892697147697 25 24.778881874258822 24.840220567650288 25.438068365905753 24.942829192185137 26 24.34729269359136 25.531001984907153 25.798508331262443 24.323196990239037 27 24.90454383308178 25.141729365645094 25.09982868535672 24.853898115916408 28 24.325810427297622 25.303727396207993 25.394699342749703 24.975762833744678 29 24.481402981637956 24.924490210622142 25.287742469624654 25.30636433811525 30 24.38009509801084 25.326482619259423 25.526102881502442 24.76731940122729 31 25.130390031343943 24.861179443107165 24.845954165623336 25.162476359925563 32 24.605053478442223 25.259654021122113 24.899985467301743 25.235307033133925 33 24.302100555903678 24.858130059818155 25.514506594592962 25.325262789685205 34 24.93781149301488 25.05375829966493 25.609711598832856 24.398718608487332 35 25.17610673417556 25.01863771367313 25.498720053047496 24.306535499103816 36 24.40395936448337 25.30269961816909 25.311444798096446 24.981896219251098 37 25.05849305286866 25.118385912595432 25.03301342241767 24.790107612118238 38 24.61562078862698 25.135487459152433 25.249741104762286 24.999150647458297 39 25.24065759085095 24.732447142149823 24.952076094417173 25.074819172582053 40 25.540347724990752 24.971249399194228 25.341798718113257 24.146604157701766 41 24.622905976883647 24.97030557575727 25.84849300796968 24.5582954393894 42 25.372103337747593 25.50805419160829 25.200607721077418 23.9192347495667 43 24.54032616757814 24.81147191879971 25.70499468088787 24.943207232734274 44 24.321520533837628 25.281605388201793 25.177739318183107 25.21913475977747 45 24.408400632381426 25.448697018710366 25.210830507056414 24.932071841851798 46 24.444765987965187 24.804426396066823 25.332435807505878 25.418371808462116 47 24.82738749439304 24.86777646153643 25.61207844015544 24.692757603915087 48 25.056494331693447 25.30801363916605 24.85184392969035 24.783648099450158 49 24.642920951908824 25.330971260043633 25.042590295200444 24.983517492847096 50 24.55504506641217 25.763002322051054 24.833867344261844 24.848085267274932 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 15.0 1 19.0 2 23.0 3 74.0 4 125.0 5 175.5 6 226.0 7 193.5 8 161.0 9 230.5 10 300.0 11 469.0 12 638.0 13 1125.5 14 1613.0 15 2157.0 16 2701.0 17 2854.5 18 3008.0 19 3160.5 20 3313.0 21 4092.5 22 4872.0 23 5847.0 24 6822.0 25 8569.5 26 10317.0 27 13312.0 28 16307.0 29 19400.0 30 22493.0 31 25639.0 32 28785.0 33 33738.0 34 38691.0 35 45265.5 36 51840.0 37 58088.0 38 64336.0 39 68393.0 40 72450.0 41 77311.5 42 82173.0 43 84826.0 44 87479.0 45 95118.0 46 102757.0 47 108206.0 48 113655.0 49 117432.0 50 121209.0 51 118746.0 52 116283.0 53 115104.5 54 113926.0 55 113076.5 56 112227.0 57 108147.5 58 104068.0 59 95423.0 60 86778.0 61 76430.5 62 66083.0 63 57199.0 64 48315.0 65 41134.5 66 33954.0 67 28933.0 68 23912.0 69 21508.0 70 19104.0 71 14722.5 72 10341.0 73 8825.5 74 7310.0 75 5693.5 76 4077.0 77 3456.0 78 2835.0 79 2336.0 80 1837.0 81 1424.5 82 1012.0 83 809.5 84 607.0 85 442.0 86 277.0 87 197.0 88 117.0 89 94.5 90 72.0 91 56.5 92 41.0 93 32.0 94 23.0 95 23.0 96 23.0 97 18.5 98 14.0 99 17.0 100 20.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009373633667072438 2 5.032823445408021E-4 3 2.5164117227040105E-4 4 0.0 5 0.0 6 2.5164117227040105E-4 7 0.0 8 0.0 9 8.178338098788032E-4 10 0.0011323852752168047 11 6.291029306760026E-5 12 6.291029306760026E-5 13 3.774617584056015E-4 14 1.2582058613520053E-4 15 0.004152079342461617 16 7.54923516811203E-4 17 0.0 18 1.8873087920280075E-4 19 6.291029306760026E-5 20 8.807441029464036E-4 21 0.0 22 1.2582058613520053E-4 23 3.1455146533800125E-4 24 5.032823445408021E-4 25 0.0018873087920280075 26 0.004403720514732018 27 0.005787746962219223 28 0.004026258756326417 29 0.0022647705504336094 30 0.0029567837741772116 31 0.006479760185962827 32 0.0028938734811096117 33 0.005095733738475621 34 0.0027051426019068106 35 0.0028938734811096117 36 0.007423414581976829 37 0.003774617584056015 38 0.007486324875044431 39 0.004152079342461617 40 0.0020760396712308084 41 0.0025793220157716104 42 0.001258205861352005 43 8.807441029464036E-4 44 0.0011323852752168047 45 0.0011323852752168047 46 6.291029306760025E-4 47 0.0013840264474872055 48 0.0015727573266900064 49 6.291029306760026E-5 50 0.0013840264474872055 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1589565.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.3131666146297 #Duplication Level Percentage of deduplicated Percentage of total 1 80.88596550258616 49.59374679645255 2 11.660033446270516 14.29827146846678 3 3.274150775849901 6.022456561233123 4 1.3638337666986193 3.3448386788900186 5 0.7337898415342923 2.2495489407057394 6 0.46450221554105364 1.7088061040599956 7 0.31777864264370465 1.3638810404089032 8 0.21190817515250757 1.0394209000102266 9 0.15371500122058496 0.848227813290516 >10 0.831129892610713 8.9123512981687 >50 0.05258262883754328 2.282847972842478 >100 0.045147267871909896 5.82371040976918 >500 0.004535190566567374 1.8653864852056767 >1k 9.276526158887812E-4 0.6465055304961234 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 6.291029306760025E-5 6 0.0 0.0 0.0 0.0 1.258205861352005E-4 7 0.0 0.0 0.0 6.291029306760025E-5 1.258205861352005E-4 8 0.0 0.0 0.0 1.258205861352005E-4 1.258205861352005E-4 9 0.0 0.0 0.0 1.258205861352005E-4 1.8873087920280078E-4 10 0.0 0.0 0.0 1.258205861352005E-4 1.8873087920280078E-4 11 0.0 0.0 0.0 1.258205861352005E-4 1.8873087920280078E-4 12 0.0 0.0 0.0 1.258205861352005E-4 3.145514653380013E-4 13 0.0 0.0 0.0 1.8873087920280078E-4 3.145514653380013E-4 14 0.0 0.0 0.0 1.8873087920280078E-4 3.7746175840560155E-4 15 0.0 6.291029306760025E-5 0.0 2.51641172270401E-4 5.661926376084022E-4 16 0.0 6.291029306760025E-5 0.0 2.51641172270401E-4 6.291029306760026E-4 17 0.0 6.291029306760025E-5 0.0 2.51641172270401E-4 6.291029306760026E-4 18 0.0 6.291029306760025E-5 0.0 3.7746175840560155E-4 6.291029306760026E-4 19 0.0 6.291029306760025E-5 0.0 5.03282344540802E-4 6.291029306760026E-4 20 0.0 6.291029306760025E-5 0.0 6.920132237436029E-4 6.920132237436029E-4 21 0.0 6.291029306760025E-5 0.0 7.549235168112031E-4 8.178338098788034E-4 22 0.0 6.291029306760025E-5 0.0 8.807441029464036E-4 8.178338098788034E-4 23 0.0 6.291029306760025E-5 0.0 0.0011952955682844049 8.178338098788034E-4 24 0.0 6.291029306760025E-5 0.0 0.0018243984989604074 8.807441029464036E-4 25 0.0 6.291029306760025E-5 0.0 0.0023276808435012094 8.807441029464036E-4 26 0.0 6.291029306760025E-5 0.0 0.002956783774177212 8.807441029464036E-4 27 0.0 6.291029306760025E-5 0.0 0.003963348463258816 9.436543960140039E-4 28 0.0 6.291029306760025E-5 0.0 0.006479760185962826 9.436543960140039E-4 29 0.0 6.291029306760025E-5 0.0 0.012959520371925652 9.436543960140039E-4 30 0.0 6.291029306760025E-5 0.0 0.0241575525379585 9.436543960140039E-4 31 0.0 6.291029306760025E-5 0.0 0.04479212866413138 0.0011323852752168045 32 0.0 6.291029306760025E-5 0.0 0.07027079735650948 0.0011952955682844049 33 0.0 6.291029306760025E-5 0.0 0.09568655575581998 0.0011952955682844049 34 0.0 6.291029306760025E-5 0.0 0.1228638023610233 0.0013211161544196054 35 0.0 6.291029306760025E-5 0.0 0.15551424446310783 0.0013211161544196054 36 0.0 6.291029306760025E-5 0.0 0.198293243749076 0.0013211161544196054 37 0.0 6.291029306760025E-5 0.0 0.26340539707404226 0.0013211161544196054 38 0.0 6.291029306760025E-5 0.0 0.3504103323865334 0.0013211161544196054 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGCGTT 30 0.005740813 29.338285 30 GTATCAA 2115 0.0 22.986273 1 TATACCG 70 3.218234E-5 21.998175 5 TATACTG 220 0.0 20.998259 5 CGTGACG 55 0.0044831103 20.000856 10 TACGACG 375 0.0 18.771776 5 GATATAC 460 0.0 18.650627 1 TGTAGGA 1045 0.0 18.524199 2 CGACGGT 370 0.0 18.430904 7 CGTAAAT 60 0.0074179936 18.331238 16 GTAGGAC 980 0.0 17.95713 3 TAGGACG 785 0.0 17.934818 4 CGCAATA 370 0.0 17.839725 36 GTACCGT 75 0.001291831 17.59854 6 AACGCAG 2735 0.0 17.534195 6 TACGAAT 390 0.0 17.486279 41 GCGAAAG 390 0.0 17.48573 18 AGGACGT 840 0.0 17.28428 5 TATGGCG 945 0.0 16.992764 16 CTGTAGG 1030 0.0 16.872389 1 >>END_MODULE