FastQCFastQC Report
Thu 2 Feb 2017
SRR4064246_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064246_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1267012
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCGAG703.213196E-522.00205210
AATCGGT703.2171138E-521.99857919
AGTATCG856.1151422E-620.7053628
GTATCAA26450.020.6287121
CAATCGG755.475623E-520.5320118
TAGGACG5150.019.6499924
GTCCTAC5950.019.2279261
GATATAC4850.019.0525721
TCCTACA5900.019.0157222
GCGACTC600.00741168118.33359531
GTATATG1456.3027983E-918.2078781
TTAGGAC3850.017.7131423
TTAATAC1254.8562106E-717.5988643
ATACACT6450.017.3949134
TTAACGG902.2152337E-417.11135735
GTAGGAC6300.017.1100063
CTAGATA2450.017.0601233
ACTGTTC5950.017.0079778
AACGCAG32250.016.985626
ATAATAC1307.3224146E-716.9219843
Produced by FastQC (version 0.11.5)