FastQCFastQC Report
Thu 2 Feb 2017
SRR4064241_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064241_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences881711
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTATT1750.022.62827944
CGGGATT904.0797204E-721.99971644
TAGTACC703.215808E-521.998474
ACGGGAT956.8628106E-720.84183743
GGCGTTA1800.020.7775142
GCGTTAT1800.020.7775143
GTACTAG654.927364E-420.3097361
GATATAC3700.020.2182481
TAGGACG2900.019.7227654
CGGCGTT1900.019.68395841
ACGGTAT2050.019.3168249
ACGACGG2050.019.315736
TACGACG1950.019.1781525
GCGGCGT2100.018.85690140
CGACGGT2100.018.8558317
TTATACT1404.0799932E-918.8558314
GACGGTA2000.018.6986988
AGGACGT3100.018.4503295
GTAATAC851.4310388E-418.1163863
TAGGACA2450.017.9579334
Produced by FastQC (version 0.11.5)