##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064241_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 881711 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.15645942945024 32.0 32.0 32.0 32.0 32.0 2 31.139938142996968 32.0 32.0 32.0 32.0 32.0 3 31.328299181931495 32.0 32.0 32.0 32.0 32.0 4 31.45431439553323 32.0 32.0 32.0 32.0 32.0 5 31.346387875392278 32.0 32.0 32.0 32.0 32.0 6 34.915574377545475 36.0 36.0 36.0 36.0 36.0 7 34.960521077768114 36.0 36.0 36.0 36.0 36.0 8 34.88791111826891 36.0 36.0 36.0 32.0 36.0 9 35.047624448373675 36.0 36.0 36.0 36.0 36.0 10 34.853544982426214 36.0 36.0 36.0 32.0 36.0 11 35.048862949424475 36.0 36.0 36.0 36.0 36.0 12 34.933113004147614 36.0 36.0 36.0 32.0 36.0 13 34.999853693557185 36.0 36.0 36.0 36.0 36.0 14 34.93279884225103 36.0 36.0 36.0 32.0 36.0 15 34.88376009826349 36.0 36.0 36.0 32.0 36.0 16 34.9031973061468 36.0 36.0 36.0 32.0 36.0 17 34.87205558283837 36.0 36.0 36.0 32.0 36.0 18 34.863501759646866 36.0 36.0 36.0 32.0 36.0 19 34.86099867190043 36.0 36.0 36.0 32.0 36.0 20 34.84510911171574 36.0 36.0 36.0 32.0 36.0 21 34.837779045514914 36.0 36.0 36.0 32.0 36.0 22 34.83447637604612 36.0 36.0 36.0 32.0 36.0 23 34.77322161116284 36.0 36.0 36.0 32.0 36.0 24 34.74856046936014 36.0 36.0 36.0 32.0 36.0 25 34.72556086971808 36.0 36.0 36.0 32.0 36.0 26 34.65291234883085 36.0 36.0 36.0 32.0 36.0 27 34.66151040420274 36.0 36.0 36.0 32.0 36.0 28 34.629824284828025 36.0 36.0 36.0 32.0 36.0 29 34.604442952395964 36.0 36.0 36.0 32.0 36.0 30 34.583852305347214 36.0 36.0 36.0 32.0 36.0 31 34.57031612399074 36.0 36.0 36.0 32.0 36.0 32 34.51671919710653 36.0 36.0 36.0 32.0 36.0 33 34.47627170354005 36.0 36.0 36.0 32.0 36.0 34 34.465669590149155 36.0 36.0 36.0 32.0 36.0 35 34.421742498392334 36.0 36.0 36.0 32.0 36.0 36 34.38887685420733 36.0 36.0 36.0 32.0 36.0 37 34.371844062283444 36.0 36.0 36.0 32.0 36.0 38 34.31925767059728 36.0 36.0 36.0 32.0 36.0 39 34.29510349763131 36.0 36.0 36.0 32.0 36.0 40 34.28448550602182 36.0 36.0 36.0 32.0 36.0 41 34.24667946753528 36.0 36.0 36.0 32.0 36.0 42 34.186332029429146 36.0 36.0 36.0 32.0 36.0 43 34.17574125762296 36.0 36.0 36.0 32.0 36.0 44 34.092668686224854 36.0 36.0 36.0 32.0 36.0 45 34.04726832261365 36.0 36.0 36.0 32.0 36.0 46 34.00698528202552 36.0 36.0 36.0 32.0 36.0 47 33.9730841511561 36.0 36.0 36.0 32.0 36.0 48 33.90831689748682 36.0 36.0 36.0 32.0 36.0 49 33.87660015583337 36.0 36.0 36.0 32.0 36.0 50 33.21160108017253 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 6.0 21 24.0 22 96.0 23 279.0 24 675.0 25 1611.0 26 3423.0 27 6526.0 28 11017.0 29 17468.0 30 25633.0 31 37640.0 32 55791.0 33 92006.0 34 181938.0 35 447576.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.087494357068806 18.65876316022295 12.288546040647253 25.96519644206099 2 15.054870773544076 21.154962867525303 38.40114867960821 25.389017679322407 3 17.897494641095143 25.597078404464053 29.431899377346294 27.07352757709451 4 11.574654280143948 16.655797647982162 37.31653569026586 34.45301238160803 5 13.367985655163652 38.02980795294603 34.051520282723025 14.550686109167291 6 32.88537701824187 37.3425215604259 17.108838753873165 12.663262667459069 7 28.712161595082282 31.429948622562975 21.60256773769153 18.25532204466321 8 27.108428952343793 34.48681030405654 19.714282797878216 18.690477945721444 9 27.207265039661927 13.718353820224975 18.622845360450583 40.45153577966252 10 14.627551587490615 28.1693671133008 33.20301778597401 24.000063513234572 11 36.92354977991655 21.14479687788856 23.162124551015015 18.769528791179876 12 23.815172998862437 24.21156138462603 30.516121495592092 21.457144120919438 13 29.445802918880176 20.23969386690378 25.733916443992793 24.58058677022325 14 22.71721994760182 20.097877987093263 26.714792845720247 30.470109219584675 15 24.318254768502083 28.29955845207566 23.264800588881794 24.11738619054046 16 24.419676831419054 26.360571028697745 25.311129434154427 23.908622705728774 17 22.876997111298373 26.503128576143432 26.384722431726495 24.2351518808317 18 23.509597281639728 25.901999301356003 27.74206426617429 22.84633915082998 19 24.792023690302152 25.4299878304796 26.437687632342115 23.34030084687613 20 24.911563190779663 25.18966137123272 26.328139974571936 23.570635463415684 21 25.98606572902005 24.87050745652487 25.592059076046457 23.551367738408615 22 24.69471289345375 25.361938322194007 26.213124254999652 23.73022452935259 23 23.76152168464127 25.04471440058886 26.46922390317872 24.724540011591152 24 23.947692255346176 25.75589341106152 26.39102647710969 23.90538785648261 25 24.21384646443567 25.342123947201877 26.44885210128638 23.995177487076074 26 23.454713524978306 26.189992797717952 27.001412100968054 23.353881576335684 27 24.025951194061168 25.564194611270846 26.41203191724654 23.99782227742144 28 23.39578985572997 25.958057345068507 26.717062879956448 23.92908991924508 29 23.629754390740455 25.38344193220935 26.587159813312013 24.39964386373818 30 23.51179843141258 26.048078395345275 26.649540368725795 23.79058280451635 31 24.13930777126848 25.64161312092736 26.013418099121527 24.205661008682632 32 23.698820775314427 26.149707207028396 25.92388857194382 24.227583445713357 33 23.639776561658206 25.554200810956416 26.46644171605183 24.33958091133354 34 23.921613994973278 26.000580704285415 26.638788324214463 23.439016976526844 35 24.48983758279648 25.602486162780146 26.578010162417204 23.32966609200617 36 23.613986096476257 26.204932359549797 26.159449303406014 24.021632240567936 37 24.161487160874696 26.148942927139096 25.883994192904453 23.805575719081755 38 23.901851429660304 25.96084809837996 26.198132350622643 23.939168121337097 39 24.296848948704397 25.480052717898 26.092297152915933 24.130801180481676 40 24.749174880059886 26.096473817328086 26.07844026812145 23.07591103449058 41 23.631995971354883 25.84242009059915 26.80512109753359 23.720462840512383 42 24.573889413131056 26.617337495009618 25.98061009690415 22.82816299495518 43 23.912976907032686 25.794915940510176 26.316070033129296 23.97603711932784 44 23.661709215007775 26.260997183858965 25.82037261980508 24.25692098132818 45 23.80821140977657 26.474991493705343 25.761823749574685 23.954973346943405 46 23.554390135464963 26.10785479026975 25.70170941721938 24.6360456570459 47 24.054471857303422 25.99412727415014 26.012273974342836 23.939126894203604 48 24.33780880895186 26.357557157018196 25.28791167910863 24.01672235492132 49 24.0461967524359 26.478750877559097 25.492141947381615 23.982910422623387 50 24.070686254606162 26.603523424660796 25.20451990985586 24.121270410877184 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 26.0 1 23.5 2 21.0 3 72.0 4 123.0 5 142.5 6 162.0 7 168.5 8 175.0 9 265.5 10 356.0 11 515.0 12 674.0 13 1262.0 14 1850.0 15 2521.5 16 3193.0 17 3567.0 18 3941.0 19 4056.0 20 4171.0 21 4676.5 22 5182.0 23 5887.5 24 6593.0 25 7534.5 26 8476.0 27 10515.0 28 12554.0 29 14312.0 30 16070.0 31 17940.5 32 19811.0 33 22856.0 34 25901.0 35 29342.0 36 32783.0 37 36506.5 38 40230.0 39 41941.5 40 43653.0 41 46280.0 42 48907.0 43 49856.5 44 50806.0 45 54225.5 46 57645.0 47 60776.5 48 63908.0 49 65159.0 50 66410.0 51 63379.5 52 60349.0 53 58567.5 54 56786.0 55 56111.0 56 55436.0 57 53506.5 58 51577.0 59 46627.5 60 41678.0 61 36555.0 62 31432.0 63 26956.0 64 22480.0 65 18951.0 66 15422.0 67 13183.0 68 10944.0 69 9851.5 70 8759.0 71 6768.5 72 4778.0 73 4005.0 74 3232.0 75 2526.5 76 1821.0 77 1578.0 78 1335.0 79 1084.5 80 834.0 81 677.0 82 520.0 83 426.0 84 332.0 85 238.5 86 145.0 87 106.0 88 67.0 89 56.0 90 45.0 91 41.5 92 38.0 93 30.5 94 23.0 95 24.0 96 25.0 97 20.5 98 16.0 99 16.0 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008733020229984654 2 3.4024754142797354E-4 3 1.1341584714265786E-4 4 0.0 5 0.0 6 3.4024754142797354E-4 7 1.1341584714265786E-4 8 0.0 9 0.0010207426242839208 10 5.670792357132892E-4 11 0.0 12 0.0 13 3.4024754142797354E-4 14 1.1341584714265786E-4 15 0.004536633885706314 16 4.5366338857063144E-4 17 0.0 18 3.4024754142797354E-4 19 0.0 20 9.073267771412629E-4 21 0.0 22 0.0 23 4.5366338857063144E-4 24 6.804950828559471E-4 25 0.001474406012854552 26 0.005217128968562261 27 0.00635128743998884 28 0.0035158912614223934 29 0.002948812025709104 30 0.002948812025709104 31 0.007485445911415419 32 0.0034024754142797354 33 0.004082970497135683 34 0.0026085644842811307 35 0.0035158912614223934 36 0.007258614217130103 37 0.0035158912614223934 38 0.0077122776057007335 39 0.004196386344278341 40 0.002381732789995815 41 0.0028353961785664464 42 0.0017012377071398677 43 0.00158782185999721 44 9.073267771412629E-4 45 0.0012475743185692363 46 7.93910929998605E-4 47 9.073267771412629E-4 48 0.0019280694014251834 49 4.5366338857063144E-4 50 0.0013609901657118941 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 881711.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.15566254298851 #Duplication Level Percentage of deduplicated Percentage of total 1 77.86721353049722 48.398882473644136 2 13.979194709023826 17.377722179136306 3 4.150242542304682 7.7388322479313345 4 1.6491872226808986 4.100252979326495 5 0.7798627354074171 2.4236442505917672 6 0.41435550616607486 1.5452724608452646 7 0.2441179889563579 1.0621320739571065 8 0.16312262198909674 0.811119571638542 9 0.11282576965545904 0.6311484418371898 >10 0.5253900935838002 6.1363349090819685 >50 0.06256712665592604 2.767677913397117 >100 0.04898473812350145 5.910668069297547 >500 0.0029354149558796397 1.0963124293152147 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 1.1341584714265786E-4 0.0 0.0 0.0 6 0.0 1.1341584714265786E-4 0.0 0.0 0.0 7 0.0 1.1341584714265786E-4 0.0 0.0 0.0 8 0.0 1.1341584714265786E-4 0.0 0.0 0.0 9 0.0 1.1341584714265786E-4 0.0 0.0 0.0 10 0.0 1.1341584714265786E-4 0.0 0.0 0.0 11 0.0 1.1341584714265786E-4 0.0 0.0 0.0 12 0.0 1.1341584714265786E-4 0.0 0.0 2.2683169428531572E-4 13 0.0 1.1341584714265786E-4 0.0 0.0 3.402475414279736E-4 14 0.0 1.1341584714265786E-4 0.0 0.0 3.402475414279736E-4 15 0.0 1.1341584714265786E-4 0.0 0.0 5.670792357132892E-4 16 0.0 1.1341584714265786E-4 0.0 1.1341584714265786E-4 5.670792357132892E-4 17 0.0 1.1341584714265786E-4 0.0 1.1341584714265786E-4 5.670792357132892E-4 18 0.0 1.1341584714265786E-4 0.0 1.1341584714265786E-4 5.670792357132892E-4 19 0.0 1.1341584714265786E-4 0.0 1.1341584714265786E-4 5.670792357132892E-4 20 0.0 2.2683169428531572E-4 0.0 1.1341584714265786E-4 6.804950828559472E-4 21 0.0 2.2683169428531572E-4 0.0 1.1341584714265786E-4 7.93910929998605E-4 22 0.0 2.2683169428531572E-4 0.0 1.1341584714265786E-4 7.93910929998605E-4 23 0.0 2.2683169428531572E-4 0.0 0.0010207426242839206 7.93910929998605E-4 24 0.0 2.2683169428531572E-4 0.0 0.0012475743185692363 7.93910929998605E-4 25 0.0 2.2683169428531572E-4 0.0 0.00158782185999721 7.93910929998605E-4 26 0.0 2.2683169428531572E-4 0.0 0.0019280694014251836 0.0010207426242839206 27 0.0 2.2683169428531572E-4 0.0 0.0021549010957104993 0.0010207426242839206 28 0.0 2.2683169428531572E-4 0.0 0.0032890595671370777 0.0010207426242839206 29 0.0 2.2683169428531572E-4 0.0 0.005557376509990235 0.0010207426242839206 30 0.0 2.2683169428531572E-4 0.0 0.010207426242839207 0.0010207426242839206 31 0.0 2.2683169428531572E-4 0.0 0.01848678308425323 0.0010207426242839206 32 0.0 2.2683169428531572E-4 0.0 0.03107594211708825 0.0010207426242839206 33 0.0 2.2683169428531572E-4 0.0 0.04173703174849809 0.0010207426242839206 34 0.0 2.2683169428531572E-4 0.0 0.05285178476847856 0.0010207426242839206 35 0.0 3.402475414279736E-4 0.0 0.06975074599273458 0.0010207426242839206 36 0.0 3.402475414279736E-4 0.0 0.09129975694983958 0.0010207426242839206 37 0.0 4.5366338857063144E-4 0.0 0.1240769367740677 0.0010207426242839206 38 0.0 4.5366338857063144E-4 0.0 0.16932985978398818 0.0010207426242839206 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTATT 175 0.0 22.628279 44 CGGGATT 90 4.0797204E-7 21.999716 44 TAGTACC 70 3.215808E-5 21.99847 4 ACGGGAT 95 6.8628106E-7 20.841837 43 GGCGTTA 180 0.0 20.77751 42 GCGTTAT 180 0.0 20.77751 43 GTACTAG 65 4.927364E-4 20.309736 1 GATATAC 370 0.0 20.218248 1 TAGGACG 290 0.0 19.722765 4 CGGCGTT 190 0.0 19.683958 41 ACGGTAT 205 0.0 19.316824 9 ACGACGG 205 0.0 19.31573 6 TACGACG 195 0.0 19.178152 5 GCGGCGT 210 0.0 18.856901 40 CGACGGT 210 0.0 18.855831 7 TTATACT 140 4.0799932E-9 18.855831 4 GACGGTA 200 0.0 18.698698 8 AGGACGT 310 0.0 18.450329 5 GTAATAC 85 1.4310388E-4 18.116386 3 TAGGACA 245 0.0 17.957933 4 >>END_MODULE