##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064235_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1948358 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.290334219891825 32.0 32.0 32.0 32.0 32.0 2 31.392882108934806 32.0 32.0 32.0 32.0 32.0 3 31.46303554069632 32.0 32.0 32.0 32.0 32.0 4 31.548429498069655 32.0 32.0 32.0 32.0 32.0 5 31.499130036677037 32.0 32.0 32.0 32.0 32.0 6 35.07434003401839 36.0 36.0 36.0 36.0 36.0 7 35.095085194815326 36.0 36.0 36.0 36.0 36.0 8 35.04539617462499 36.0 36.0 36.0 36.0 36.0 9 35.14190667218242 36.0 36.0 36.0 36.0 36.0 10 35.010354359927696 36.0 36.0 36.0 36.0 36.0 11 35.144407752579355 36.0 36.0 36.0 36.0 36.0 12 35.05802578376253 36.0 36.0 36.0 36.0 36.0 13 35.09653256742344 36.0 36.0 36.0 36.0 36.0 14 35.037476685496195 36.0 36.0 36.0 36.0 36.0 15 35.01098514749343 36.0 36.0 36.0 36.0 36.0 16 35.0254029290305 36.0 36.0 36.0 36.0 36.0 17 34.99192396879834 36.0 36.0 36.0 36.0 36.0 18 34.98948961125214 36.0 36.0 36.0 36.0 36.0 19 34.980525139630394 36.0 36.0 36.0 36.0 36.0 20 34.97701500442937 36.0 36.0 36.0 36.0 36.0 21 34.97256920956005 36.0 36.0 36.0 36.0 36.0 22 34.950463929113646 36.0 36.0 36.0 36.0 36.0 23 34.90731580130551 36.0 36.0 36.0 32.0 36.0 24 34.873799373626404 36.0 36.0 36.0 32.0 36.0 25 34.844360738632226 36.0 36.0 36.0 32.0 36.0 26 34.78793835629797 36.0 36.0 36.0 32.0 36.0 27 34.7732993628481 36.0 36.0 36.0 32.0 36.0 28 34.753433917175386 36.0 36.0 36.0 32.0 36.0 29 34.72806948209723 36.0 36.0 36.0 32.0 36.0 30 34.70653391214551 36.0 36.0 36.0 32.0 36.0 31 34.691240008253104 36.0 36.0 36.0 32.0 36.0 32 34.651629218038984 36.0 36.0 36.0 32.0 36.0 33 34.631672926638736 36.0 36.0 36.0 32.0 36.0 34 34.62115381259502 36.0 36.0 36.0 32.0 36.0 35 34.58806133164439 36.0 36.0 36.0 32.0 36.0 36 34.55318273130503 36.0 36.0 36.0 32.0 36.0 37 34.53413797669627 36.0 36.0 36.0 32.0 36.0 38 34.499313267890194 36.0 36.0 36.0 32.0 36.0 39 34.4846075515896 36.0 36.0 36.0 32.0 36.0 40 34.47367218960787 36.0 36.0 36.0 32.0 36.0 41 34.45262369646646 36.0 36.0 36.0 32.0 36.0 42 34.39577788065643 36.0 36.0 36.0 32.0 36.0 43 34.3791377149374 36.0 36.0 36.0 32.0 36.0 44 34.31262735082567 36.0 36.0 36.0 32.0 36.0 45 34.275861520316084 36.0 36.0 36.0 32.0 36.0 46 34.24213927830512 36.0 36.0 36.0 32.0 36.0 47 34.20720575992708 36.0 36.0 36.0 32.0 36.0 48 34.15927103745821 36.0 36.0 36.0 32.0 36.0 49 34.13912997508671 36.0 36.0 36.0 32.0 36.0 50 33.54318970127667 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 16.0 20 32.0 21 113.0 22 292.0 23 791.0 24 1931.0 25 4166.0 26 8198.0 27 14603.0 28 23999.0 29 36012.0 30 50986.0 31 71136.0 32 101058.0 33 160282.0 34 331889.0 35 1142850.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.42745127025338 18.090908810929506 12.010200216200234 26.471439702616884 2 15.653185693953503 20.622208216076057 37.58829902825517 26.136307061715264 3 18.357238982238343 24.628224645008043 28.774853029788222 28.239683342965392 4 12.426566370246125 16.366602031043577 35.88088020784681 35.32595139086349 5 14.093354506717965 37.10750283058863 33.51062792361568 15.288514739077726 6 33.807048708219284 35.7197885192498 16.93647519422775 13.536687578303155 7 29.656212372084333 30.516220358312708 21.0786130241219 18.74895424548106 8 27.570138547433277 33.78783570575839 19.481430004136815 19.16059574267152 9 27.643822876365142 14.094862585162504 18.40516051149341 39.85615402697895 10 15.961409259047304 27.207119075029397 31.85055198186356 24.98091968405974 11 37.01277537946074 21.043371414992222 22.86973075262901 19.074122452918022 12 24.919778520968446 23.356563174286425 29.334834085762562 22.388824218982567 13 29.930484697805525 19.869037769433387 25.096543327988634 25.103934204772454 14 23.52126613411512 19.677256107200122 25.37221123860321 31.429266520081544 15 24.894008639450753 27.835589691788414 22.358633702070346 24.911767966690483 16 25.192163190894423 25.77645426064391 24.498137905831825 24.533244642629843 17 23.767141356978545 26.05193706700719 25.437111660177443 24.743809915836824 18 24.412029635256406 25.098300874327318 26.781105086085443 23.708564404330833 19 25.714627393938894 24.599893859342075 25.569890133127487 24.115588613591548 20 25.9855815868056 24.62760644691743 25.27990465739588 24.10690730888109 21 26.511862809606857 24.24744323168535 24.65912322068121 24.581570738026585 22 25.798314065807276 24.71914783540585 25.10916896090858 24.373369137878292 23 24.573060725898134 24.526149116301273 25.630881594378817 25.26990856342178 24 24.972925809017887 24.84225113557626 25.64267200451664 24.542151050889213 25 24.982189820584257 24.618697916773595 25.739969327483518 24.659142935158627 26 24.26195227712283 25.323932066143527 26.129373673166867 24.284741983566775 27 24.82514862238775 25.067882268278936 25.446431779475276 24.660537329858034 28 24.37363628944463 25.127998238436273 25.651334594966098 24.847030877153 29 24.505865354757084 24.84877881029921 25.432619636042613 25.212736198901098 30 24.320463671233608 25.241841894145445 25.69229118857329 24.745403246047662 31 25.051239106075858 24.75589243303756 25.137215066683982 25.055653394202604 32 24.611929121471075 25.264552369230266 25.044513370949208 25.07900513834946 33 24.339886350046168 24.91059985227867 25.675127023404954 25.07438677427021 34 24.958823097663043 24.9258713104392 25.767065766531967 24.348239825365795 35 25.18564978966192 24.970332989100196 25.732077121909857 24.111940099328027 36 24.318547658547 25.334925921059114 25.476544406300818 24.86998201409307 37 24.943552861673588 25.13207783468829 25.154097223042033 24.770272080596094 38 24.596613788660786 25.264668064541794 25.360654349282285 24.778063797515134 39 25.246718504028955 24.63299547855973 25.18122460250694 24.93906141490438 40 25.579761248512806 24.903274748986554 25.503541032139783 24.013422970360857 41 24.626621293544595 24.925036827166387 26.02507840208593 24.423263477203086 42 25.263021744910226 25.60085160635995 25.391388880049355 23.744737768680473 43 24.541299942720237 24.915209522812333 25.714662593438902 24.828827941028532 44 24.18142885152135 25.43573124525877 25.2823694500019 25.100470453217984 45 24.403925413046046 25.368443744129586 25.402729517073595 24.82490132575077 46 24.409753944383425 24.81615118511143 25.357586458215714 25.416508412289435 47 24.85432298748099 24.976479700171993 25.53347324896308 24.635724063383936 48 24.977724398456104 25.304980701322165 24.78314650570748 24.93414839451425 49 24.577334233925356 25.459106894661527 25.038699452048608 24.92485941936451 50 24.493580416098872 25.893647652996023 24.79368281122086 24.819089119684243 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 52.0 1 49.0 2 46.0 3 155.0 4 264.0 5 321.0 6 378.0 7 368.0 8 358.0 9 472.5 10 587.0 11 898.0 12 1209.0 13 2199.0 14 3189.0 15 4230.5 16 5272.0 17 5602.0 18 5932.0 19 5991.5 20 6051.0 21 6556.0 22 7061.0 23 8064.0 24 9067.0 25 10510.0 26 11953.0 27 15591.0 28 19229.0 29 23091.5 30 26954.0 31 31257.5 32 35561.0 33 42279.0 34 48997.0 35 56896.0 36 64795.0 37 72075.5 38 79356.0 39 83275.0 40 87194.0 41 92483.0 42 97772.0 43 100850.5 44 103929.0 45 112894.5 46 121860.0 47 129169.0 48 136478.0 49 141698.5 50 146919.0 51 145389.0 52 143859.0 53 142379.5 54 140900.0 55 139572.5 56 138245.0 57 133866.0 58 129487.0 59 118900.5 60 108314.0 61 95122.5 62 81931.0 63 70938.5 64 59946.0 65 50780.0 66 41614.0 67 35079.5 68 28545.0 69 24895.0 70 21245.0 71 16529.5 72 11814.0 73 10123.0 74 8432.0 75 6637.0 76 4842.0 77 4179.5 78 3517.0 79 2887.5 80 2258.0 81 1800.0 82 1342.0 83 1078.0 84 814.0 85 595.0 86 376.0 87 270.5 88 165.0 89 119.5 90 74.0 91 67.0 92 60.0 93 50.0 94 40.0 95 36.5 96 33.0 97 27.5 98 22.0 99 21.0 100 20.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008417344245770028 2 3.592768885389646E-4 3 2.0530107916512264E-4 4 0.0 5 0.0 6 5.132526979128066E-5 7 2.0530107916512264E-4 8 0.0 9 0.0012318064749907358 10 7.698790468692099E-4 11 5.132526979128066E-5 12 1.0265053958256132E-4 13 5.132526979128066E-4 14 1.0265053958256132E-4 15 0.004413973202050136 16 7.185537770779292E-4 17 0.0 18 1.5397580937384197E-4 19 0.0 20 8.212043166604905E-4 21 0.0 22 1.0265053958256132E-4 23 6.672285072866485E-4 24 4.106021583302453E-4 25 0.0017450591729035424 26 0.005645779677040872 27 0.006774935612449047 28 0.004567949011423978 29 0.002720239298937875 30 0.004157346853093733 31 0.0071342125009880115 32 0.003438793076015804 33 0.004875900630171663 34 0.0029255403781029976 35 0.0033874678062245237 36 0.008519994785352588 37 0.0038493952343460493 38 0.008366018975978747 39 0.004362647932258856 40 0.0028742151083117166 41 0.0034901183458070847 42 0.0020530107916512264 43 0.001334457014573297 44 0.0012318064749907358 45 0.0014371075541558583 46 9.238548562430518E-4 47 0.002104336061442507 48 0.001950360252068665 49 5.132526979128066E-4 50 0.0011804812051994552 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1948358.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.61054374568023 #Duplication Level Percentage of deduplicated Percentage of total 1 78.36752459810839 45.147957040999955 2 12.831375507397885 14.784450399723918 3 3.8203043986856637 6.602694410468852 4 1.6042268080709885 3.6968151481746663 5 0.8582998190278677 2.47235596355072 6 0.5338940144933365 1.8454754686515122 7 0.35783437310420074 1.4430522963799335 8 0.2664721613194908 1.228128488536199 9 0.1926126298790942 0.9986866505658066 >10 1.046720435919815 10.56224719833703 >50 0.06371585000884478 2.5260361318098963 >100 0.05038640429910421 5.826585167320542 >500 0.005467742983913696 2.067172269448058 >1k 0.0011652567014898026 0.7983433660329982 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.132526979128066E-5 0.0 5 0.0 0.0 0.0 5.132526979128066E-5 0.0 6 0.0 0.0 0.0 5.132526979128066E-5 0.0 7 0.0 0.0 0.0 5.132526979128066E-5 0.0 8 0.0 0.0 0.0 1.0265053958256132E-4 0.0 9 0.0 0.0 0.0 1.0265053958256132E-4 0.0 10 0.0 0.0 0.0 1.0265053958256132E-4 0.0 11 0.0 0.0 0.0 1.0265053958256132E-4 0.0 12 0.0 0.0 0.0 1.0265053958256132E-4 1.5397580937384197E-4 13 0.0 0.0 0.0 1.0265053958256132E-4 2.0530107916512264E-4 14 0.0 0.0 0.0 1.0265053958256132E-4 2.0530107916512264E-4 15 0.0 0.0 0.0 1.0265053958256132E-4 3.0795161874768394E-4 16 0.0 0.0 0.0 1.0265053958256132E-4 3.592768885389646E-4 17 0.0 0.0 0.0 1.5397580937384197E-4 3.592768885389646E-4 18 0.0 0.0 0.0 2.566263489564033E-4 3.592768885389646E-4 19 0.0 0.0 0.0 2.566263489564033E-4 3.592768885389646E-4 20 0.0 0.0 0.0 3.592768885389646E-4 4.619274281215259E-4 21 0.0 0.0 0.0 4.106021583302453E-4 5.132526979128066E-4 22 0.0 0.0 0.0 6.672285072866485E-4 5.132526979128066E-4 23 0.0 0.0 0.0 0.0011291559354081745 5.132526979128066E-4 24 0.0 0.0 0.0 0.0018990349822773844 5.132526979128066E-4 25 0.0 0.0 0.0 0.0026175887593553136 5.132526979128066E-4 26 0.0 0.0 0.0 0.003284817266641962 5.645779677040872E-4 27 0.0 0.0 0.0 0.004003371043719891 6.159032374953679E-4 28 0.0 0.0 0.0 0.0069802366916141695 6.159032374953679E-4 29 0.0 0.0 0.0 0.014576376620723707 6.159032374953679E-4 30 0.0 0.0 0.0 0.02730504352896131 6.159032374953679E-4 31 0.0 0.0 0.0 0.06117972159120654 6.159032374953679E-4 32 0.0 0.0 0.0 0.09510572492324305 7.185537770779292E-4 33 0.0 0.0 0.0 0.12913437879486214 7.185537770779292E-4 34 0.0 0.0 0.0 0.16629387412374932 7.698790468692099E-4 35 0.0 0.0 0.0 0.2072514394171913 7.698790468692099E-4 36 0.0 0.0 0.0 0.2675073061521548 7.698790468692099E-4 37 0.0 0.0 0.0 0.35034629159528174 7.698790468692099E-4 38 0.0 0.0 0.0 0.4632618851360992 7.698790468692099E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 3680 0.0 20.923864 1 TCTAGCG 410 0.0 19.31802 28 GTACGTA 60 0.007415984 18.33235 11 ATACGAA 425 0.0 18.11807 40 TAGGACG 1045 0.0 18.103827 4 TACGAAT 440 0.0 18.00042 41 GTCCTAA 600 0.0 17.966623 1 CGCAATA 435 0.0 17.70338 36 TTAGGAC 715 0.0 17.53707 3 TACACCG 165 1.6625563E-9 17.331959 5 CTAGCGG 450 0.0 17.111511 29 AGTACGT 90 2.2175908E-4 17.109755 5 GTGTATA 685 0.0 17.021858 1 CGAATGC 435 0.0 16.689617 43 GGACGTG 1125 0.0 16.425364 6 GCGCAAT 470 0.0 16.385042 35 AGGACGT 1155 0.0 16.379654 5 GTAGGAC 1210 0.0 16.362339 3 ATAGCGT 340 0.0 16.175188 6 TCCAATA 505 0.0 16.117533 2 >>END_MODULE