##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064219_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1518431 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.298570037097505 32.0 32.0 32.0 32.0 32.0 2 31.392119892178176 32.0 32.0 32.0 32.0 32.0 3 31.463147815080173 32.0 32.0 32.0 32.0 32.0 4 31.545274036159693 32.0 32.0 32.0 32.0 32.0 5 31.508456426403306 32.0 32.0 32.0 32.0 32.0 6 35.071770794985085 36.0 36.0 36.0 36.0 36.0 7 35.084503016600685 36.0 36.0 36.0 36.0 36.0 8 35.03392054034724 36.0 36.0 36.0 36.0 36.0 9 35.135367362758004 36.0 36.0 36.0 36.0 36.0 10 34.99685925801041 36.0 36.0 36.0 36.0 36.0 11 35.13404231078001 36.0 36.0 36.0 36.0 36.0 12 35.04262689578914 36.0 36.0 36.0 36.0 36.0 13 35.08443189055018 36.0 36.0 36.0 36.0 36.0 14 35.025382121413486 36.0 36.0 36.0 36.0 36.0 15 34.99721422968841 36.0 36.0 36.0 36.0 36.0 16 35.01076703518303 36.0 36.0 36.0 36.0 36.0 17 34.97451382380892 36.0 36.0 36.0 36.0 36.0 18 34.968715074968834 36.0 36.0 36.0 36.0 36.0 19 34.97303993398449 36.0 36.0 36.0 36.0 36.0 20 34.96761064546232 36.0 36.0 36.0 36.0 36.0 21 34.961288329861546 36.0 36.0 36.0 36.0 36.0 22 34.944028408271436 36.0 36.0 36.0 36.0 36.0 23 34.899750466106134 36.0 36.0 36.0 32.0 36.0 24 34.86908986974054 36.0 36.0 36.0 32.0 36.0 25 34.84342587842319 36.0 36.0 36.0 32.0 36.0 26 34.77866758515863 36.0 36.0 36.0 32.0 36.0 27 34.772410468437485 36.0 36.0 36.0 32.0 36.0 28 34.758444736705194 36.0 36.0 36.0 32.0 36.0 29 34.73403730561349 36.0 36.0 36.0 32.0 36.0 30 34.712588849937866 36.0 36.0 36.0 32.0 36.0 31 34.69861719103469 36.0 36.0 36.0 32.0 36.0 32 34.6642540885954 36.0 36.0 36.0 32.0 36.0 33 34.63869546920473 36.0 36.0 36.0 32.0 36.0 34 34.63841557502448 36.0 36.0 36.0 32.0 36.0 35 34.597937607965065 36.0 36.0 36.0 32.0 36.0 36 34.56390642709481 36.0 36.0 36.0 32.0 36.0 37 34.552405081297735 36.0 36.0 36.0 32.0 36.0 38 34.52144351636657 36.0 36.0 36.0 32.0 36.0 39 34.527076962996674 36.0 36.0 36.0 32.0 36.0 40 34.49146849609893 36.0 36.0 36.0 32.0 36.0 41 34.47930001429107 36.0 36.0 36.0 32.0 36.0 42 34.4128742102868 36.0 36.0 36.0 32.0 36.0 43 34.39732987537794 36.0 36.0 36.0 32.0 36.0 44 34.34316607076647 36.0 36.0 36.0 32.0 36.0 45 34.30453803959482 36.0 36.0 36.0 32.0 36.0 46 34.288832353923226 36.0 36.0 36.0 32.0 36.0 47 34.25242437753181 36.0 36.0 36.0 32.0 36.0 48 34.206166101719475 36.0 36.0 36.0 32.0 36.0 49 34.188773806646466 36.0 36.0 36.0 32.0 36.0 50 33.59852373930722 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 8.0 20 19.0 21 77.0 22 249.0 23 624.0 24 1543.0 25 3441.0 26 6710.0 27 11723.0 28 18713.0 29 28182.0 30 39416.0 31 54842.0 32 78137.0 33 122465.0 34 252300.0 35 899978.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.621488079046664 17.920454088901156 11.74252927465252 26.715528557399658 2 16.12924470272428 20.554628423455405 36.60385584508127 26.71227102873905 3 18.27239067927098 24.32024825773072 28.67002717294665 28.737333890051648 4 12.70212475904404 15.907999770816058 35.52272049240302 35.86715497773689 5 14.395188190968177 36.67924324516557 33.26762954655167 15.657939017314584 6 34.22295953446591 35.404181166311474 16.638984528736298 13.733874770486318 7 30.018657441342334 30.380808058855568 21.053470396047494 18.547064103754604 8 27.959255310251173 32.9667268384273 19.464434011160204 19.609583840161324 9 27.624474946951366 14.020315881397613 18.35074399802953 40.0044651736215 10 15.73411835987408 26.87280199154384 31.930559397268215 25.462520251313865 11 37.359155602065556 21.143667377707647 22.31658863655971 19.18058838366709 12 24.665328882247533 23.42602330958733 28.90404634784195 23.00460146032319 13 29.69083612022513 19.529800094572114 25.192470057652113 25.586893727550645 14 23.69700769480015 19.16811333826826 25.377100527650963 31.757778439280628 15 25.12422951357354 26.92301359559893 22.27819639492373 25.674560495903805 16 25.66027471959358 25.73364040671197 23.582853503738423 25.02323136995603 17 24.24285331371659 25.62480613211927 25.126923778558265 25.00541677560587 18 24.861863535002694 24.98330508039246 25.9290212364646 24.225810148140244 19 25.52101478433989 24.707741082736064 25.584435512710158 24.186808620213892 20 25.850784564501833 24.191232740305395 25.13181447581766 24.826168219375113 21 26.557084253416853 24.12589047510226 24.769251944935267 24.547773326545624 22 25.79402999818891 24.10958723677495 25.163508240446514 24.932874524589625 23 24.671862425234686 24.02480739822631 25.549486373317492 25.75384380322151 24 24.852873381541336 24.697316947880033 25.407397162840322 25.042412507738305 25 25.02171681016116 24.279426689383428 25.428063189825668 25.270793310629745 26 24.809857633619963 24.870120974540548 25.582018736300792 24.738002655538697 27 25.239672796248485 24.759141682912695 25.000197586806472 25.000987934032352 28 24.83913458688708 24.50146540652682 25.652188230645105 25.00721177594099 29 24.76233002521755 24.703254176965427 25.534333473613774 25.000082324203248 30 24.685533037883562 24.959314735672564 25.594735909660603 24.760416316783274 31 25.180019587606463 24.55722064114833 24.965965381177853 25.296794390067355 32 24.888597934369265 24.762410315245123 24.87641384797158 25.472577902414027 33 24.716023412302984 24.443556051416444 25.32576545414191 25.514655082138667 34 25.169309071462486 24.499119783821804 25.477664637965407 24.8539065067503 35 25.55248427753728 24.45657149217351 25.339426713796186 24.651517516493026 36 24.8465720258552 24.93496023847693 25.1209574906705 25.097510244997373 37 25.459313782311348 24.689597669051707 25.006783670716672 24.84430487792027 38 24.82865772775712 24.596359363659236 25.38750423168979 25.187478676893853 39 25.249315378850046 24.61165285130384 24.940363208149858 25.198668561696252 40 25.34436078143142 24.649810688010284 25.317621985875853 24.688206544682437 41 24.63954624846216 24.926368117263053 25.520494426896317 24.91359120737847 42 25.3668335089568 25.02785827186512 25.123880400421495 24.481427818756586 43 24.9858569254306 24.281633892272907 25.340240554105577 25.392268628190916 44 24.69095799399632 24.814508937685805 25.159015860095018 25.335517208222857 45 24.870686419011566 24.907633156436834 25.06299385801652 25.15868656653508 46 24.677542466924436 24.683140402142495 25.25755441357677 25.3817627173563 47 24.792297129534806 24.662291432729955 25.453521646211954 25.091889791523286 48 25.287276080084297 25.186512118018967 24.755202845100104 24.771008956796628 49 24.69572089500634 25.187612163919855 24.879595633633535 25.237071307440274 50 24.74942555078961 25.319692757757945 24.88245936047618 25.048422330976265 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 39.0 1 48.5 2 58.0 3 151.5 4 245.0 5 296.5 6 348.0 7 357.0 8 366.0 9 474.5 10 583.0 11 854.0 12 1125.0 13 1995.5 14 2866.0 15 3689.0 16 4512.0 17 4531.0 18 4550.0 19 4489.0 20 4428.0 21 4892.5 22 5357.0 23 6137.0 24 6917.0 25 7853.0 26 8789.0 27 10604.5 28 12420.0 29 14505.5 30 16591.0 31 19185.0 32 21779.0 33 25286.5 34 28794.0 35 33218.0 36 37642.0 37 44327.5 38 51013.0 39 57300.5 40 63588.0 41 70105.5 42 76623.0 43 80874.5 44 85126.0 45 93514.5 46 101903.0 47 108302.0 48 114701.0 49 117992.5 50 121284.0 51 119813.0 52 118342.0 53 116543.5 54 114745.0 55 113278.0 56 111811.0 57 107383.5 58 102956.0 59 94497.5 60 86039.0 61 75323.5 62 64608.0 63 55687.0 64 46766.0 65 39813.0 66 32860.0 67 27980.5 68 23101.0 69 20460.5 70 17820.0 71 13943.5 72 10067.0 73 8509.5 74 6952.0 75 5398.0 76 3844.0 77 3341.0 78 2838.0 79 2319.0 80 1800.0 81 1383.5 82 967.0 83 826.0 84 685.0 85 485.5 86 286.0 87 204.5 88 123.0 89 98.5 90 74.0 91 59.0 92 44.0 93 33.0 94 22.0 95 20.0 96 18.0 97 13.5 98 9.0 99 8.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0090883286761137 2 5.927170875726326E-4 3 5.927170875726326E-4 4 0.0 5 0.0 6 1.9757236252421082E-4 7 1.317149083494739E-4 8 0.0 9 8.561469042715804E-4 10 7.244319959221064E-4 11 0.0 12 0.0 13 8.561469042715804E-4 14 1.9757236252421082E-4 15 0.004741736700581061 16 6.585745417473695E-4 17 0.0 18 3.2928727087368475E-4 19 0.0 20 5.927170875726326E-4 21 0.0 22 3.9514472504842163E-4 23 8.561469042715804E-4 24 7.244319959221064E-4 25 0.0014488639918442128 26 0.006256458146600009 27 0.007310177413395802 28 0.005334453788153693 29 0.0028977279836884255 30 0.004478306883882113 31 0.008166324317667381 32 0.0037538748879600062 33 0.005532026150677904 34 0.003556302525435795 35 0.0040831621588336905 36 0.008495611588541067 37 0.005202738879804219 38 0.00823218177184212 39 0.004807594154755798 40 0.002502583258640004 41 0.004412449429707376 42 0.0020415810794168453 43 0.001317149083494739 44 0.0019098661710673715 45 0.0019098661710673715 46 9.220043584463174E-4 47 0.0023708683502905305 48 0.0020415810794168453 49 3.9514472504842163E-4 50 0.001317149083494739 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1518431.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.78001016304921 #Duplication Level Percentage of deduplicated Percentage of total 1 80.19702628598148 48.743760727082794 2 11.882486572196687 14.444353092408207 3 3.444087795668344 6.279950736694673 4 1.4453038376885183 3.513823277736087 5 0.7763658034275001 2.3593760711283664 6 0.4831902613208252 1.76209853962597 7 0.3377669639248581 1.4370635650066605 8 0.23687088253705044 1.151761171834589 9 0.18349147306656702 1.0037352238036934 >10 0.9136319250724713 9.574591616345614 >50 0.05116994183261892 2.1716578417289716 >100 0.04402060318762729 5.5168028367121815 >500 0.004369194376565746 1.8768430285903355 >1k 2.1845971882828737E-4 0.1641822713018712 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.585745417473695E-5 2 0.0 0.0 0.0 0.0 6.585745417473695E-5 3 0.0 0.0 0.0 0.0 6.585745417473695E-5 4 0.0 0.0 0.0 0.0 1.317149083494739E-4 5 0.0 0.0 0.0 0.0 1.317149083494739E-4 6 0.0 0.0 0.0 0.0 1.317149083494739E-4 7 0.0 0.0 0.0 0.0 1.317149083494739E-4 8 0.0 0.0 0.0 0.0 1.317149083494739E-4 9 0.0 0.0 0.0 0.0 1.317149083494739E-4 10 0.0 0.0 0.0 0.0 1.317149083494739E-4 11 0.0 0.0 0.0 0.0 1.317149083494739E-4 12 0.0 0.0 0.0 0.0 1.9757236252421084E-4 13 0.0 0.0 0.0 0.0 2.634298166989478E-4 14 0.0 0.0 0.0 0.0 2.634298166989478E-4 15 0.0 0.0 0.0 0.0 3.951447250484217E-4 16 0.0 0.0 0.0 0.0 4.6100217922315863E-4 17 0.0 0.0 0.0 0.0 4.6100217922315863E-4 18 0.0 0.0 0.0 0.0 4.6100217922315863E-4 19 0.0 0.0 0.0 0.0 4.6100217922315863E-4 20 0.0 0.0 0.0 6.585745417473695E-5 4.6100217922315863E-4 21 0.0 0.0 0.0 6.585745417473695E-5 4.6100217922315863E-4 22 0.0 0.0 0.0 3.951447250484217E-4 4.6100217922315863E-4 23 0.0 0.0 0.0 8.561469042715804E-4 5.927170875726325E-4 24 0.0 0.0 0.0 0.001383006537669476 5.927170875726325E-4 25 0.0 0.0 0.0 0.0018440087168926345 5.927170875726325E-4 26 0.0 0.0 0.0 0.00237086835029053 6.585745417473695E-4 27 0.0 0.0 0.0 0.0033587301629115843 6.585745417473695E-4 28 0.0 0.0 0.0 0.006651602871648432 6.585745417473695E-4 29 0.0 0.0 0.0 0.014620354826791603 6.585745417473695E-4 30 0.0 0.0 0.0 0.027725988207564254 6.585745417473695E-4 31 0.0 0.0 0.0 0.06104986001998115 6.585745417473695E-4 32 0.0 0.0 0.0 0.10043261761647385 6.585745417473695E-4 33 0.0 0.0 0.0 0.13843236867529707 6.585745417473695E-4 34 0.0 0.0 0.0 0.17636626227994556 7.902894500968434E-4 35 0.0 1.317149083494739E-4 0.0 0.2210176162104172 7.902894500968434E-4 36 0.0 1.317149083494739E-4 0.0 0.27910389079253517 8.561469042715804E-4 37 0.0 1.9757236252421084E-4 0.0 0.3717653288163901 8.561469042715804E-4 38 0.0 1.9757236252421084E-4 0.0 0.49406262121887656 8.561469042715804E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2740 0.0 22.64298 1 TAGGACG 115 8.782081E-9 21.041998 4 ACGCGAG 55 0.004483393 20.00057 27 CTATCGG 55 0.004483393 20.00057 1 GGTATCA 1350 0.0 18.741272 1 CCGAACG 60 0.007414556 18.332645 9 CGCAATG 60 0.0074159647 18.332043 2 GTATAGG 140 8.373536E-8 17.286207 1 ATTACAC 270 0.0 17.109907 3 CGAATGC 355 0.0 16.73177 43 TAGCGGC 370 0.0 16.64967 30 AACGCAG 3660 0.0 16.649101 6 TCTAGCG 360 0.0 16.50047 28 CGCAATA 365 0.0 16.275507 36 TATCAAC 3875 0.0 15.952426 2 TACGAAT 360 0.0 15.888294 41 GTATAGT 125 9.440822E-6 15.84045 1 CGGTCCA 375 0.0 15.83993 10 CGCCGGT 350 0.0 15.713181 7 CTAGCGG 380 0.0 15.632023 29 >>END_MODULE