##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064218_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 638306 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.21464156689738 32.0 32.0 32.0 32.0 32.0 2 31.36513051733808 32.0 32.0 32.0 32.0 32.0 3 31.429845559966537 32.0 32.0 32.0 32.0 32.0 4 31.51500377561859 32.0 32.0 32.0 32.0 32.0 5 31.460493869711392 32.0 32.0 32.0 32.0 32.0 6 35.01805090348516 36.0 36.0 36.0 36.0 36.0 7 35.037950450097604 36.0 36.0 36.0 36.0 36.0 8 34.99568388829182 36.0 36.0 36.0 36.0 36.0 9 35.08791551387579 36.0 36.0 36.0 36.0 36.0 10 34.948469856150496 36.0 36.0 36.0 36.0 36.0 11 35.09003048694513 36.0 36.0 36.0 36.0 36.0 12 35.00290456301523 36.0 36.0 36.0 36.0 36.0 13 35.04380657552961 36.0 36.0 36.0 36.0 36.0 14 34.98891440782321 36.0 36.0 36.0 36.0 36.0 15 34.95388888714817 36.0 36.0 36.0 36.0 36.0 16 34.96496194615122 36.0 36.0 36.0 36.0 36.0 17 34.92812538187014 36.0 36.0 36.0 36.0 36.0 18 34.928109715402954 36.0 36.0 36.0 36.0 36.0 19 34.918413738865056 36.0 36.0 36.0 32.0 36.0 20 34.9216927304459 36.0 36.0 36.0 32.0 36.0 21 34.9132046385276 36.0 36.0 36.0 32.0 36.0 22 34.904854411520496 36.0 36.0 36.0 32.0 36.0 23 34.844026219399474 36.0 36.0 36.0 32.0 36.0 24 34.82217619762309 36.0 36.0 36.0 32.0 36.0 25 34.79909635817304 36.0 36.0 36.0 32.0 36.0 26 34.73583986363907 36.0 36.0 36.0 32.0 36.0 27 34.718284020516805 36.0 36.0 36.0 32.0 36.0 28 34.70759478995967 36.0 36.0 36.0 32.0 36.0 29 34.68318643409274 36.0 36.0 36.0 32.0 36.0 30 34.65054221642911 36.0 36.0 36.0 32.0 36.0 31 34.63869993388751 36.0 36.0 36.0 32.0 36.0 32 34.59216582642181 36.0 36.0 36.0 32.0 36.0 33 34.551516044029036 36.0 36.0 36.0 32.0 36.0 34 34.52928376045345 36.0 36.0 36.0 32.0 36.0 35 34.47119250014883 36.0 36.0 36.0 32.0 36.0 36 34.448784752140824 36.0 36.0 36.0 32.0 36.0 37 34.427204193599934 36.0 36.0 36.0 32.0 36.0 38 34.38175577230983 36.0 36.0 36.0 32.0 36.0 39 34.37782035575414 36.0 36.0 36.0 32.0 36.0 40 34.34092425889777 36.0 36.0 36.0 32.0 36.0 41 34.312039993357416 36.0 36.0 36.0 32.0 36.0 42 34.24563767221364 36.0 36.0 36.0 32.0 36.0 43 34.21697900380069 36.0 36.0 36.0 32.0 36.0 44 34.15396690615473 36.0 36.0 36.0 32.0 36.0 45 34.10757536354037 36.0 36.0 36.0 32.0 36.0 46 34.062612602732855 36.0 36.0 36.0 32.0 36.0 47 34.00881238778893 36.0 36.0 36.0 32.0 36.0 48 33.94032485986345 36.0 36.0 36.0 32.0 36.0 49 33.917740080776305 36.0 36.0 36.0 32.0 36.0 50 33.30776931440406 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 3.0 20 8.0 21 25.0 22 77.0 23 285.0 24 687.0 25 1465.0 26 2914.0 27 5428.0 28 9072.0 29 12992.0 30 18259.0 31 25472.0 32 35598.0 33 55426.0 34 110605.0 35 359988.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.72765360064928 18.25346339812549 11.783544276031499 26.235338725193735 2 15.804975411210107 20.936896344816457 37.00804795244862 26.250080291524817 3 18.297209014499337 24.990404273818942 28.79845841721434 27.91392829446738 4 12.293320131723656 16.001729577976707 35.93871904697747 35.76623124332217 5 13.927645987974419 37.271622074678916 33.344822075932235 15.455909861414433 6 33.6583608149709 35.9229521937005 16.869678288592443 13.549008702736154 7 29.419745388575386 30.888320022058384 21.266132544578934 18.425802044787297 8 27.787926167073472 33.14366463733695 19.723298856661227 19.34511033892835 9 27.54190819363935 13.976030079899735 18.878897070343097 39.60316465611781 10 15.587943619076267 27.121060440137178 32.20236220842518 25.088633732361377 11 36.69014029343339 21.339015047665303 22.853338137724126 19.11750652117718 12 24.536977562485703 24.089543259815823 29.261827399397784 22.11165177830069 13 29.60850881164588 19.736238118887112 25.60805761527049 25.04719545419652 14 23.40178535059987 19.664549604735033 26.16456683784893 30.769098206816164 15 24.79330815063868 27.23491192584945 23.229704090281682 24.74207583323019 16 24.86174256073144 25.969212065761976 24.667007153353744 24.502038220152844 17 23.52696042337061 25.921736596554002 25.99004239346019 24.561260586615198 18 23.996716298190204 25.094782423422068 27.103856469644562 23.80464480874317 19 24.94273906245594 24.93380917616316 26.5178456727651 23.605606088615804 20 25.43161522794924 24.340748864170454 26.071753094156353 24.155882813723956 21 26.096887699629956 24.26516435690719 25.666686510858426 23.971261432604425 22 25.3324037881577 24.390064310948528 26.059955663828422 24.21757623706535 23 24.25736447224742 24.198458094222005 26.540769950227244 25.00340748330333 24 24.453708577730985 24.929970672281545 26.401839875670525 24.21448087431694 25 24.48891346818174 24.550170218565963 26.626476389517734 24.334439923734564 26 23.983530300205402 25.383736798153738 26.843949907796627 23.78878299384423 27 24.484727890890003 24.942851994892322 26.121691173590495 24.45072894062718 28 23.924947240278815 25.03670071176663 26.69602723607997 24.34232481187458 29 23.86962543319275 24.967255955029422 26.57202749873097 24.591091113046858 30 24.02429031818374 25.24569976452304 26.583829328553815 24.14618058873941 31 24.27978509887238 25.20669897390822 25.99839873904617 24.515117188173228 32 24.168584584484215 25.202615157321485 25.876458413953774 24.752341844240526 33 24.038723666935102 24.908893784096286 26.286532574193206 24.76584997477541 34 24.661397338179654 25.07108893362683 26.23780912915077 24.02970459904275 35 24.766676536989426 25.084406926773173 26.222314136338927 23.926602399898478 36 23.967254210732474 25.61707794751273 25.97587152369761 24.439796318057187 37 24.72155680648492 25.550188709988237 25.676152039618916 24.052102443907934 38 24.119459015674256 25.224365603123573 26.123394814522342 24.532780566679826 39 24.557635122220237 25.236497178327806 25.56597950096667 24.63988819848529 40 24.722185230735487 25.55206529998355 25.95831015925488 23.767439310026088 41 23.927668334685922 25.54811196305081 26.416380220654823 24.107839481608444 42 24.693557180726064 25.874834715146044 25.730386719557817 23.70122138457007 43 24.076453078489738 25.308318972270094 26.096663011123294 24.518564938116874 44 23.91950430443604 25.723842423957578 25.584721797914757 24.771931473691634 45 23.996622246174958 25.875693645874787 25.649935609609365 24.47774849834089 46 23.986601869346295 25.604968212339692 25.531021560462353 24.877408357851664 47 24.169345691313694 25.53815495102555 25.841934412463264 24.450564945197495 48 24.652823472642616 25.876244728118163 25.04402373835173 24.42690806088749 49 23.972940750709306 25.98060795578275 25.264333709852533 24.78211758365541 50 24.01848045420933 26.239706969807113 25.170923834709914 24.57088874127364 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 239.0 1 149.5 2 60.0 3 163.0 4 266.0 5 288.0 6 310.0 7 283.5 8 257.0 9 370.5 10 484.0 11 686.5 12 889.0 13 1504.5 14 2120.0 15 2663.5 16 3207.0 17 3479.0 18 3751.0 19 3632.0 20 3513.0 21 3791.0 22 4069.0 23 4476.5 24 4884.0 25 5065.5 26 5247.0 27 6179.5 28 7112.0 29 8279.0 30 9446.0 31 10514.5 32 11583.0 33 13292.0 34 15001.0 35 17046.5 36 19092.0 37 21684.5 38 24277.0 39 25913.0 40 27549.0 41 29821.0 42 32093.0 43 33203.0 44 34313.0 45 37256.5 46 40200.0 47 42719.5 48 45239.0 49 45983.5 50 46728.0 51 46021.0 52 45314.0 53 45020.5 54 44727.0 55 44339.5 56 43952.0 57 42514.5 58 41077.0 59 37699.5 60 34322.0 61 30496.5 62 26671.0 63 22899.0 64 19127.0 65 16321.5 66 13516.0 67 11456.0 68 9396.0 69 8183.5 70 6971.0 71 5483.5 72 3996.0 73 3424.0 74 2852.0 75 2233.0 76 1614.0 77 1381.5 78 1149.0 79 964.5 80 780.0 81 609.0 82 438.0 83 350.5 84 263.0 85 184.0 86 105.0 87 75.0 88 45.0 89 32.5 90 20.0 91 16.0 92 12.0 93 10.0 94 8.0 95 10.0 96 12.0 97 9.5 98 7.0 99 5.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009399880308190743 2 0.0010966527026222532 3 1.5666467180317905E-4 4 0.0 5 0.0 6 1.5666467180317905E-4 7 0.0 8 0.0 9 9.399880308190742E-4 10 7.833233590158952E-4 11 1.5666467180317905E-4 12 0.0 13 4.699940154095371E-4 14 0.0 15 0.0057965928567176245 16 6.266586872127162E-4 17 0.0 18 3.133293436063581E-4 19 0.0 20 9.399880308190742E-4 21 0.0 22 1.5666467180317905E-4 23 7.833233590158952E-4 24 3.133293436063581E-4 25 0.0014099820462286114 26 0.0067365808875366985 27 0.00798989826196213 28 0.0054832635131112665 29 0.0034466227796699387 30 0.004229946138685835 31 0.009243215636387563 32 0.004229946138685835 33 0.0062665868721271615 34 0.0032899581078667597 35 0.004543275482292192 36 0.008773221620978025 37 0.003916616795079477 38 0.0097132096517971 39 0.0050132694977017295 40 0.0032899581078667597 41 0.0037599521232762967 42 0.0021933054052445063 43 9.399880308190742E-4 44 0.0017233113898349694 45 0.0018799760616381484 46 0.0012533173744254324 47 0.0021933054052445063 48 0.0021933054052445063 49 4.699940154095371E-4 50 0.0015666467180317904 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 638306.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 65.88770121421445 #Duplication Level Percentage of deduplicated Percentage of total 1 81.50819911799462 53.70387869995127 2 12.035562205061161 15.859910530243235 3 3.1613195095764075 6.248762258689117 4 1.1971047533761339 3.154979212502503 5 0.5916505581513326 1.9491247599349109 6 0.3474707438157475 1.373642912952769 7 0.21817621073329566 1.0062590289391409 8 0.141931515704488 0.7481233039694312 9 0.11303602744807467 0.6702915602646439 >10 0.5770480872525476 7.008687977171142 >50 0.06859007574593591 3.2074005168738715 >100 0.03943321675533734 4.831640259528645 >500 4.779783849008316E-4 0.2372989789793828 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 812 0.12721171350418137 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 695 0.10888194690320945 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 1.5666467180317905E-4 7 0.0 0.0 0.0 0.0 1.5666467180317905E-4 8 0.0 0.0 0.0 0.0 1.5666467180317905E-4 9 0.0 0.0 0.0 0.0 1.5666467180317905E-4 10 0.0 0.0 0.0 0.0 1.5666467180317905E-4 11 0.0 0.0 0.0 0.0 1.5666467180317905E-4 12 0.0 0.0 0.0 0.0 3.133293436063581E-4 13 0.0 0.0 0.0 0.0 3.133293436063581E-4 14 0.0 0.0 0.0 0.0 3.133293436063581E-4 15 0.0 0.0 0.0 1.5666467180317905E-4 6.266586872127162E-4 16 0.0 0.0 0.0 4.6999401540953714E-4 6.266586872127162E-4 17 0.0 0.0 0.0 4.6999401540953714E-4 6.266586872127162E-4 18 0.0 0.0 0.0 4.6999401540953714E-4 6.266586872127162E-4 19 0.0 0.0 0.0 4.6999401540953714E-4 6.266586872127162E-4 20 0.0 0.0 0.0 6.266586872127162E-4 6.266586872127162E-4 21 0.0 0.0 0.0 6.266586872127162E-4 6.266586872127162E-4 22 0.0 0.0 0.0 9.399880308190743E-4 6.266586872127162E-4 23 0.0 0.0 0.0 0.0031332934360635807 6.266586872127162E-4 24 0.0 0.0 0.0 0.004229946138685834 6.266586872127162E-4 25 0.0 0.0 0.0 0.0053265988413080875 6.266586872127162E-4 26 0.0 0.0 0.0 0.0065799162157335195 6.266586872127162E-4 27 0.0 0.0 0.0 0.00814656293376531 6.266586872127162E-4 28 0.0 0.0 0.0 0.015353137836711547 6.266586872127162E-4 29 0.0 0.0 0.0 0.025223012160311826 6.266586872127162E-4 30 0.0 0.0 0.0 0.046059413510134636 6.266586872127162E-4 31 0.0 0.0 0.0 0.0911788389894502 6.266586872127162E-4 32 0.0 0.0 0.0 0.13692492315597848 6.266586872127162E-4 33 0.0 0.0 0.0 0.1817310192916877 6.266586872127162E-4 34 0.0 0.0 0.0 0.23186371426870497 7.833233590158952E-4 35 0.0 0.0 0.0 0.2915529542257162 7.833233590158952E-4 36 0.0 0.0 0.0 0.36800531406566755 7.833233590158952E-4 37 0.0 0.0 0.0 0.48519048857444547 7.833233590158952E-4 38 0.0 0.0 0.0 0.6512550406858153 7.833233590158952E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACGTA 30 0.005744207 29.332079 11 TATTCCG 40 7.030227E-4 27.498825 5 GTTATAT 50 8.3377985E-5 26.39887 1 GTAAACG 85 2.3482244E-7 23.294947 27 TGACCTA 60 2.8715504E-4 21.99906 5 GTAAACT 50 0.0025797563 21.99906 4 GAATGCG 55 0.0044804094 20.000711 9 TACAGCG 55 0.0044824416 19.999147 7 TTATACT 145 2.9467628E-10 19.723295 4 TAGTACA 90 1.0011154E-5 19.55472 4 TATACTG 80 8.983052E-5 19.249178 5 TAAACGC 105 1.7893744E-6 18.857815 28 ATAGTAC 70 8.1199175E-4 18.856339 3 GGCGTTA 130 3.5810444E-8 18.61459 42 TATAGTA 95 1.5968499E-5 18.524073 2 GTGTATA 170 1.2551027E-10 18.116873 1 TATACTA 85 1.4299608E-4 18.116873 5 GTATCAA 1945 0.0 17.870703 1 GTCCTAT 225 0.0 17.599247 1 GTATAGC 100 2.480949E-5 17.599247 3 >>END_MODULE