##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064216_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1450775 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.27231376333339 32.0 32.0 32.0 32.0 32.0 2 31.445987144801915 32.0 32.0 32.0 32.0 32.0 3 31.500072719753234 32.0 32.0 32.0 32.0 32.0 4 31.568546466543744 32.0 32.0 32.0 32.0 32.0 5 31.541081835570644 32.0 32.0 32.0 32.0 32.0 6 35.11539073943237 36.0 36.0 36.0 36.0 36.0 7 35.13426203236202 36.0 36.0 36.0 36.0 36.0 8 35.08827902328066 36.0 36.0 36.0 36.0 36.0 9 35.18350605710741 36.0 36.0 36.0 36.0 36.0 10 35.06981647740001 36.0 36.0 36.0 36.0 36.0 11 35.186367975737106 36.0 36.0 36.0 36.0 36.0 12 35.126303527424994 36.0 36.0 36.0 36.0 36.0 13 35.14605228240079 36.0 36.0 36.0 36.0 36.0 14 35.10159259706019 36.0 36.0 36.0 36.0 36.0 15 35.08835829125812 36.0 36.0 36.0 36.0 36.0 16 35.10705657321087 36.0 36.0 36.0 36.0 36.0 17 35.09021109407041 36.0 36.0 36.0 36.0 36.0 18 35.069665523599454 36.0 36.0 36.0 36.0 36.0 19 35.063072495735035 36.0 36.0 36.0 36.0 36.0 20 35.05294825179645 36.0 36.0 36.0 36.0 36.0 21 35.03958987437749 36.0 36.0 36.0 36.0 36.0 22 35.02354534645276 36.0 36.0 36.0 36.0 36.0 23 34.99171063741793 36.0 36.0 36.0 36.0 36.0 24 34.98289810618463 36.0 36.0 36.0 36.0 36.0 25 34.954305112784546 36.0 36.0 36.0 36.0 36.0 26 34.91770605366097 36.0 36.0 36.0 36.0 36.0 27 34.88533507952646 36.0 36.0 36.0 36.0 36.0 28 34.86656235460357 36.0 36.0 36.0 32.0 36.0 29 34.84757595078492 36.0 36.0 36.0 32.0 36.0 30 34.816511864348364 36.0 36.0 36.0 32.0 36.0 31 34.792251038238184 36.0 36.0 36.0 32.0 36.0 32 34.759927624890146 36.0 36.0 36.0 32.0 36.0 33 34.75640536954386 36.0 36.0 36.0 32.0 36.0 34 34.7395233582051 36.0 36.0 36.0 32.0 36.0 35 34.70748599886268 36.0 36.0 36.0 32.0 36.0 36 34.67250469576606 36.0 36.0 36.0 32.0 36.0 37 34.62613430752529 36.0 36.0 36.0 32.0 36.0 38 34.59919904878427 36.0 36.0 36.0 32.0 36.0 39 34.539302097154966 36.0 36.0 36.0 32.0 36.0 40 34.54317588874912 36.0 36.0 36.0 32.0 36.0 41 34.51478003136255 36.0 36.0 36.0 32.0 36.0 42 34.482359428581276 36.0 36.0 36.0 32.0 36.0 43 34.453408695352486 36.0 36.0 36.0 32.0 36.0 44 34.386983508814254 36.0 36.0 36.0 32.0 36.0 45 34.32861953094036 36.0 36.0 36.0 32.0 36.0 46 34.23341731143699 36.0 36.0 36.0 32.0 36.0 47 34.19558787544588 36.0 36.0 36.0 32.0 36.0 48 34.13686960417708 36.0 36.0 36.0 32.0 36.0 49 34.090745291309815 36.0 36.0 36.0 32.0 36.0 50 33.58020368423774 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 6.0 20 13.0 21 42.0 22 153.0 23 497.0 24 1139.0 25 2468.0 26 5015.0 27 9570.0 28 16040.0 29 24967.0 30 36137.0 31 51568.0 32 74199.0 33 115845.0 34 234609.0 35 878505.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.34205169248671 20.468945283282906 12.695563336152823 24.493439688077558 2 12.993963189101482 22.057588887525625 43.19580139043788 21.752646532935017 3 17.871393900208922 28.235744993524133 29.731846032213216 24.161015074053726 4 10.344884630628458 17.751477658492874 40.16322310489222 31.740414605986455 5 10.974203442987369 41.041236580448384 34.81035998001069 13.174199996553565 6 28.777968710473655 39.82325284520735 19.360437504695774 12.038340939623222 7 27.1954330553436 33.447892950861366 21.898808428334412 17.45786556546062 8 25.44274611845393 37.58708276610777 20.196033154693183 16.77413796074512 9 27.948691790934692 14.842269097205468 20.645770981043064 36.56326813081677 10 14.545765354548895 30.51981755756814 33.89756672197105 21.036850365911913 11 33.4881701159725 23.39825265806207 25.31019627440506 17.803380951560374 12 23.86186379518201 26.512867985367784 31.99464284852675 17.63062537092346 13 28.53872670287275 23.62167926113668 26.6747497361744 21.164844299816167 14 20.667809505691103 23.599970498485977 28.670508756366438 27.061711239456482 15 22.09077655346883 33.1611871469389 24.496020900183012 20.252015399409252 16 20.508409034982332 29.81207793702753 29.351078502937423 20.328434525052714 17 19.859661215557203 30.336130688769796 28.458168909720666 21.346039185952336 18 19.40944382561512 28.851821931556255 32.372026402567464 19.366707840261157 19 23.203735934242044 26.76259240750633 29.35100205062811 20.68266960762351 20 23.921434824265734 27.45872881297518 29.771638509205456 18.848197853553632 21 23.724147438438077 26.30304492426462 27.899019489583154 22.07378814771415 22 22.502088543203204 29.82667159277957 28.372549235855114 19.29869062816211 23 20.747206299577325 29.755494346427124 29.489082993512383 20.008216360483168 24 21.61012538867318 27.99349862038684 30.31385423868307 20.082521752256906 25 20.708805790108563 28.7400999483026 30.11173530932276 20.43935895226607 26 19.514954077595213 29.376621621994225 30.482357579885132 20.626066720525426 27 20.672885703315693 29.456051428717174 29.310398309238185 20.56066455872895 28 19.516573081339963 29.803698286237374 29.09880983728147 21.58091879514119 29 21.12183353437877 28.730863346544886 28.585972772703773 21.561330346372564 30 19.920233041939 29.108804832890566 30.222178412739552 20.74878371243088 31 21.881419491817518 27.900335019921968 29.547929907766118 20.670315580494396 32 20.318858841305378 29.62641031862448 29.387703896504945 20.667026943565197 33 19.75478163405843 29.545318248274803 30.234981977752916 20.46491813991385 34 20.309756808714933 29.465635384707646 30.507440629025933 19.717167177551488 35 20.327090724732187 29.7398066765054 29.864985121273513 20.068117477488904 36 19.79201205519415 29.25369883108459 30.69138827058837 20.26290084313289 37 20.163792384433037 28.863841118216303 28.708058444696118 22.264308052654545 38 20.23691350671696 30.330691769792423 28.989091831557584 20.44330289193303 39 21.869821522613663 28.596293140766356 29.062614598584425 20.471270738035564 40 22.026589317262378 28.439071834720792 29.832850014440975 19.70148883357585 41 22.071891982805923 27.814854845691695 29.924893088454656 20.18836008304773 42 20.693270432404823 29.767216475374408 29.50045735059249 20.039055741628278 43 19.951418365898007 29.566418565794063 30.066641208640473 20.415521859667457 44 19.537277013427445 29.566572003639475 29.745168049849735 21.15098293308335 45 20.11832443338202 29.83070217824212 29.095982304410732 20.95499108396513 46 20.499559540598778 28.549351442487307 29.405179912845558 21.545909104068357 47 21.4116442000954 28.663903034848232 28.82395839939121 21.10049436566516 48 19.666063072073605 29.39225354005816 29.302713832058245 21.638969555809982 49 21.233635403017296 28.506261162183645 28.732003509862704 21.528099924936363 50 19.992693484794177 30.3771126857647 28.412211530508145 21.217982298932974 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 21.0 1 24.5 2 28.0 3 114.5 4 201.0 5 296.0 6 391.0 7 406.0 8 421.0 9 591.0 10 761.0 11 1251.0 12 1741.0 13 3017.0 14 4293.0 15 5978.0 16 7663.0 17 8151.5 18 8640.0 19 9056.5 20 9473.0 21 10701.5 22 11930.0 23 14081.5 24 16233.0 25 18611.5 26 20990.0 27 26348.5 28 31707.0 29 39587.5 30 47468.0 31 57466.5 32 67465.0 33 80416.0 34 93367.0 35 105659.0 36 117951.0 37 121408.0 38 124865.0 39 120555.5 40 116246.0 41 111944.5 42 107643.0 43 103317.0 44 98991.0 45 96121.5 46 93252.0 47 91102.0 48 88952.0 49 83614.5 50 78277.0 51 76597.5 52 74918.0 53 68060.0 54 61202.0 55 55202.0 56 49202.0 57 43597.0 58 37992.0 59 33041.5 60 28091.0 61 23428.5 62 18766.0 63 14960.0 64 11154.0 65 9302.5 66 7451.0 67 5987.5 68 4524.0 69 3684.5 70 2845.0 71 2461.5 72 2078.0 73 1774.0 74 1470.0 75 1210.0 76 950.0 77 717.5 78 485.0 79 366.0 80 247.0 81 209.0 82 171.0 83 143.5 84 116.0 85 86.0 86 56.0 87 40.0 88 24.0 89 23.5 90 23.0 91 18.5 92 14.0 93 11.0 94 8.0 95 7.0 96 6.0 97 6.5 98 7.0 99 6.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.010890730816287848 2 6.203580844720925E-4 3 2.757147042098189E-4 4 0.0 5 0.0 6 1.3785735210490946E-4 7 1.3785735210490946E-4 8 0.0 9 8.960727886819114E-4 10 0.0011028588168392757 11 0.0 12 2.757147042098189E-4 13 4.1357205631472834E-4 14 1.3785735210490946E-4 15 0.004825007323671831 16 9.650014647343662E-4 17 0.0 18 4.825007323671831E-4 19 0.0 20 3.446433802622736E-4 21 0.0 22 2.0678602815736417E-4 23 7.582154365770019E-4 24 4.1357205631472834E-4 25 0.0017232169013113683 26 0.004618221295514466 27 0.004687149971566921 28 0.003377505126570281 29 0.0017232169013113683 30 0.003377505126570281 31 0.007926797746032293 32 0.002688218366045734 33 0.004687149971566921 34 0.0016542882252589134 35 0.0031707190984129174 36 0.007857869069979838 37 0.00248143233788837 38 0.008202512450242113 39 0.004066791887094828 40 0.002895004394203098 41 0.0029639330702555533 42 0.0019300029294687323 43 0.001447502197101549 44 0.0010339301407868207 45 0.001240716168944185 46 0.0011717874928917303 47 0.0018610742534162774 48 0.0015164308731540038 49 4.1357205631472834E-4 50 0.0010339301407868207 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1450775.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.95839652338242 #Duplication Level Percentage of deduplicated Percentage of total 1 79.1363466111736 51.40570182580445 2 13.349637311588467 17.34342067859009 3 3.909871562826059 7.619369620006561 4 1.499696040266222 3.89671400192639 5 0.6912093490992112 2.2449925489727813 6 0.3759684145106456 1.4653383210029953 7 0.22253793195039046 1.0118995057588869 8 0.1466796561911503 0.7622460215022516 9 0.09793610137864703 0.57255948965775 >10 0.4829732821544067 5.724650670508937 >50 0.051534928272111064 2.368064739645092 >100 0.033050180717662074 4.046958490715562 >500 0.0015991436696893612 0.6894023896991166 >1k 9.594862018136168E-4 0.8486816962092087 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1991 0.13723699402043735 No Hit CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 1974 0.1360652065275456 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 6.892867605245473E-5 11 0.0 0.0 0.0 6.892867605245473E-5 6.892867605245473E-5 12 0.0 0.0 0.0 1.3785735210490946E-4 6.892867605245473E-5 13 0.0 0.0 0.0 1.3785735210490946E-4 6.892867605245473E-5 14 0.0 0.0 0.0 1.3785735210490946E-4 6.892867605245473E-5 15 0.0 0.0 0.0 1.3785735210490946E-4 6.892867605245473E-5 16 0.0 0.0 0.0 3.446433802622736E-4 6.892867605245473E-5 17 0.0 0.0 0.0 4.1357205631472834E-4 6.892867605245473E-5 18 0.0 0.0 0.0 8.960727886819114E-4 6.892867605245473E-5 19 0.0 0.0 0.0 8.960727886819114E-4 6.892867605245473E-5 20 0.0 0.0 0.0 9.650014647343661E-4 1.3785735210490946E-4 21 0.0 0.0 0.0 0.0011717874928917303 1.3785735210490946E-4 22 0.0 0.0 0.0 0.0018610742534162774 2.0678602815736417E-4 23 0.0 0.0 0.0 0.0026192896899932794 2.0678602815736417E-4 24 0.0 0.0 0.0 0.003997863211042374 2.0678602815736417E-4 25 0.0 0.0 0.0 0.004825007323671831 2.757147042098189E-4 26 0.0 0.0 0.0 0.005858937464458651 2.757147042098189E-4 27 0.0 0.0 0.0 0.007857869069979838 4.8250073236718303E-4 28 0.0 0.0 0.0 0.012062518309179577 4.8250073236718303E-4 29 0.0 0.0 0.0 0.020196102083369232 4.8250073236718303E-4 30 0.0 0.0 0.0 0.037910771828850096 4.8250073236718303E-4 31 0.0 0.0 0.0 0.0818872671503162 4.8250073236718303E-4 32 0.0 0.0 0.0 0.138546638865434 5.514294084196378E-4 33 0.0 0.0 0.0 0.18521135255294585 5.514294084196378E-4 34 0.0 0.0 0.0 0.2444900139580569 5.514294084196378E-4 35 0.0 0.0 0.0 0.3122469025176199 5.514294084196378E-4 36 0.0 0.0 0.0 0.40468025710396166 5.514294084196378E-4 37 0.0 0.0 0.0 0.5440540400820251 5.514294084196378E-4 38 0.0 0.0 0.0 0.7340214712825903 5.514294084196378E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCGTT 190 0.0 26.630953 25 TAGGACC 1160 0.0 26.551102 4 TTACGGC 175 0.0 26.39938 18 GGACCGT 215 0.0 24.557562 6 TAGCGCG 45 0.0013985396 24.44387 17 CCGCCGT 210 0.0 24.094673 24 TGTGCGA 175 0.0 23.887623 31 GCCGTTT 215 0.0 23.53433 26 GTATCAA 5835 0.0 23.413332 1 AGGCGTA 85 2.3538632E-7 23.29357 18 TGTTACG 95 2.6870111E-8 23.15735 16 TGCGAAG 180 0.0 22.002516 33 ATAGCGC 60 2.873618E-4 21.999483 16 GTCGGCA 70 3.2165095E-5 21.999483 16 GACCGTT 230 0.0 21.999481 7 GGCCGCC 220 0.0 21.999481 22 TACGGCC 210 0.0 21.998726 19 CCTACCG 80 3.61819E-6 21.998724 3 GTAGGAC 2505 0.0 21.691357 3 ACCGTTA 225 0.0 21.510605 8 >>END_MODULE