FastQCFastQC Report
Thu 2 Feb 2017
SRR4064210_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064210_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2115940
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA35050.023.0366921
CGGCTAA1057.75708E-820.9513349
TAGGACG10850.019.8699764
AGGACGT11400.018.3324185
GGACGTG11650.018.127856
TTAGGAC7550.018.0653233
GTAGGAC11800.017.8974113
TAGTACG750.00129194217.5987057
AACGCAG45200.017.5699186
GACGTGA7350.016.7606727
TGTAGGA12300.016.6333162
GATATAC6500.016.5853541
TATACTG3200.016.4991765
TATCGAG800.001989678716.49917610
TCAACGC49200.016.0967564
TATCAAC50150.015.9234322
GTATTAG3650.015.6719321
ATCAACG50700.015.6639133
CAACGCA50500.015.6388235
TAGGACC9850.015.6337384
Produced by FastQC (version 0.11.5)