FastQCFastQC Report
Thu 2 Feb 2017
SRR4064209_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064209_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1903945
Sequences flagged as poor quality0
Sequence length25
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACATGGGCAG48120.2527383931783744No Hit
GTATCAACGCAGAGTACTTTTTTTT45630.23966028430443104No Hit
TCCCTGGTCAGTGCCAGTTCTGAGT36370.19102442560052943No Hit
GTCCTTGACAGTCCTTGAAAATCCA35040.18403892969597338No Hit
GTTCTAAGTTGGTTGTTAAGCGTAC34540.18141280341606505No Hit
GTCATACACCGGCGCAGAAGCGTTG31790.16696910887656943No Hit
ATGTAGATAAGGGAAGTCGGCAAAA29850.15677973891052524No Hit
TATCAACGCAGAGTACATGGGCAGA29200.15336577474664448No Hit
GTACATGGGCAGAAATCACATTGCG28870.151632531401905No Hit
TATCAACGCAGAGTACTTTTTTTTT28730.15089721604353068No Hit
GTCCCAATCAGTCCGGCCGTTTCCA27510.14448946792055442No Hit
GTGTATGACCGGGATCCACCTTGCG25810.13556063856886624No Hit
ACGCAGAGTACATGGGCAGAAATCA25570.13430009795451023No Hit
GTCTACCACCCTGAAATCGGATTAT23180.1217472143365486No Hit
GTGCCAGTTCTGAGTTAATCTTTCA22220.11670505187912465No Hit
GACTAATGTAGGTAAGGGAAGTCGG20570.1080388351554273No Hit
TATCTACATTGTTCTATCAACTAGA20510.10772370000183829No Hit
GTCAAGGACGCACCGGACTCGACGG20440.10735604232265113No Hit
GCCTCTAGTTGATAGAACAATGTAG20100.10557027645231348No Hit
CCCTTAGAGCCAATCCTTTTCCCGA20070.10541270887551898No Hit
ACTAGAGGCTGTTCACCTTGGAGAC19710.10352189795398502No Hit
TCGCAATGCTATGTTTTAATTAGAC19420.10199874471163821No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGTT555.906568E-717.2740659
GGTATCA11850.016.5112721
CGCGTTC653.3712931E-614.61613310
TAGCGGT400.0052834114.2484824
GACTCGA3550.013.64930316
ACTCGAC3450.013.49415317
GTATCAA38900.013.3313691
CTCGACG3500.013.3013818
ACCGGAC3500.013.3010312
CTATACG500.001502157113.2971851
TCGACGG3500.012.75846719
CGTTCGG751.47781775E-512.66764812
GCGTTCG751.4782172E-512.667315511
TCTATAG751.4826175E-512.6636533
CGACCAT2250.012.2450710
CTTATGG550.00307435412.0880333
ACAGTCC6150.012.0497148
CGTTATT1501.4551915E-1112.0285742
TTTAAAC1201.0053554E-811.8721753
CGCAAGA2800.011.8703042