Basic Statistics
Measure | Value |
---|---|
Filename | SRR4064209_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1903945 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACATGGGCAG | 4812 | 0.2527383931783744 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 4563 | 0.23966028430443104 | No Hit |
TCCCTGGTCAGTGCCAGTTCTGAGT | 3637 | 0.19102442560052943 | No Hit |
GTCCTTGACAGTCCTTGAAAATCCA | 3504 | 0.18403892969597338 | No Hit |
GTTCTAAGTTGGTTGTTAAGCGTAC | 3454 | 0.18141280341606505 | No Hit |
GTCATACACCGGCGCAGAAGCGTTG | 3179 | 0.16696910887656943 | No Hit |
ATGTAGATAAGGGAAGTCGGCAAAA | 2985 | 0.15677973891052524 | No Hit |
TATCAACGCAGAGTACATGGGCAGA | 2920 | 0.15336577474664448 | No Hit |
GTACATGGGCAGAAATCACATTGCG | 2887 | 0.151632531401905 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 2873 | 0.15089721604353068 | No Hit |
GTCCCAATCAGTCCGGCCGTTTCCA | 2751 | 0.14448946792055442 | No Hit |
GTGTATGACCGGGATCCACCTTGCG | 2581 | 0.13556063856886624 | No Hit |
ACGCAGAGTACATGGGCAGAAATCA | 2557 | 0.13430009795451023 | No Hit |
GTCTACCACCCTGAAATCGGATTAT | 2318 | 0.1217472143365486 | No Hit |
GTGCCAGTTCTGAGTTAATCTTTCA | 2222 | 0.11670505187912465 | No Hit |
GACTAATGTAGGTAAGGGAAGTCGG | 2057 | 0.1080388351554273 | No Hit |
TATCTACATTGTTCTATCAACTAGA | 2051 | 0.10772370000183829 | No Hit |
GTCAAGGACGCACCGGACTCGACGG | 2044 | 0.10735604232265113 | No Hit |
GCCTCTAGTTGATAGAACAATGTAG | 2010 | 0.10557027645231348 | No Hit |
CCCTTAGAGCCAATCCTTTTCCCGA | 2007 | 0.10541270887551898 | No Hit |
ACTAGAGGCTGTTCACCTTGGAGAC | 1971 | 0.10352189795398502 | No Hit |
TCGCAATGCTATGTTTTAATTAGAC | 1942 | 0.10199874471163821 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCGTT | 55 | 5.906568E-7 | 17.274065 | 9 |
GGTATCA | 1185 | 0.0 | 16.511272 | 1 |
CGCGTTC | 65 | 3.3712931E-6 | 14.616133 | 10 |
TAGCGGT | 40 | 0.00528341 | 14.248482 | 4 |
GACTCGA | 355 | 0.0 | 13.649303 | 16 |
ACTCGAC | 345 | 0.0 | 13.494153 | 17 |
GTATCAA | 3890 | 0.0 | 13.331369 | 1 |
CTCGACG | 350 | 0.0 | 13.30138 | 18 |
ACCGGAC | 350 | 0.0 | 13.30103 | 12 |
CTATACG | 50 | 0.0015021571 | 13.297185 | 1 |
TCGACGG | 350 | 0.0 | 12.758467 | 19 |
CGTTCGG | 75 | 1.47781775E-5 | 12.667648 | 12 |
GCGTTCG | 75 | 1.4782172E-5 | 12.6673155 | 11 |
TCTATAG | 75 | 1.4826175E-5 | 12.663653 | 3 |
CGACCAT | 225 | 0.0 | 12.24507 | 10 |
CTTATGG | 55 | 0.003074354 | 12.088033 | 3 |
ACAGTCC | 615 | 0.0 | 12.049714 | 8 |
CGTTATT | 150 | 1.4551915E-11 | 12.028574 | 2 |
TTTAAAC | 120 | 1.0053554E-8 | 11.872175 | 3 |
CGCAAGA | 280 | 0.0 | 11.870304 | 2 |