##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064208_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2170693 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.308639222589285 32.0 32.0 32.0 32.0 32.0 2 31.34714397660102 32.0 32.0 32.0 32.0 32.0 3 31.437195863256573 32.0 32.0 32.0 32.0 32.0 4 31.527807939676407 32.0 32.0 32.0 32.0 32.0 5 31.47405736324759 32.0 32.0 32.0 32.0 32.0 6 35.05357782053934 36.0 36.0 36.0 36.0 36.0 7 35.067132017286646 36.0 36.0 36.0 36.0 36.0 8 35.004106061981126 36.0 36.0 36.0 36.0 36.0 9 35.129337036605364 36.0 36.0 36.0 36.0 36.0 10 34.96753387051969 36.0 36.0 36.0 36.0 36.0 11 35.12572160135035 36.0 36.0 36.0 36.0 36.0 12 35.027864833949344 36.0 36.0 36.0 36.0 36.0 13 35.07214792695236 36.0 36.0 36.0 36.0 36.0 14 35.018178526396866 36.0 36.0 36.0 36.0 36.0 15 34.98979726750858 36.0 36.0 36.0 36.0 36.0 16 35.0028898605192 36.0 36.0 36.0 36.0 36.0 17 34.964449141357164 36.0 36.0 36.0 36.0 36.0 18 34.96125476979011 36.0 36.0 36.0 36.0 36.0 19 34.96042876629721 36.0 36.0 36.0 36.0 36.0 20 34.95873253380372 36.0 36.0 36.0 36.0 36.0 21 34.955521116988905 36.0 36.0 36.0 36.0 36.0 22 34.938426115530845 36.0 36.0 36.0 36.0 36.0 23 34.88321287257111 36.0 36.0 36.0 32.0 36.0 24 34.85934860433972 36.0 36.0 36.0 32.0 36.0 25 34.82867360792152 36.0 36.0 36.0 32.0 36.0 26 34.771103513946926 36.0 36.0 36.0 32.0 36.0 27 34.76486080712473 36.0 36.0 36.0 32.0 36.0 28 34.744960250021535 36.0 36.0 36.0 32.0 36.0 29 34.72276595538844 36.0 36.0 36.0 32.0 36.0 30 34.70062279649863 36.0 36.0 36.0 32.0 36.0 31 34.698208820869645 36.0 36.0 36.0 32.0 36.0 32 34.66137035499723 36.0 36.0 36.0 32.0 36.0 33 34.64422652120774 36.0 36.0 36.0 32.0 36.0 34 34.6369666277083 36.0 36.0 36.0 32.0 36.0 35 34.599568893436334 36.0 36.0 36.0 32.0 36.0 36 34.57936705006189 36.0 36.0 36.0 32.0 36.0 37 34.57288570977103 36.0 36.0 36.0 32.0 36.0 38 34.53381063098283 36.0 36.0 36.0 32.0 36.0 39 34.54271331782062 36.0 36.0 36.0 32.0 36.0 40 34.518445031149035 36.0 36.0 36.0 32.0 36.0 41 34.508487842361866 36.0 36.0 36.0 32.0 36.0 42 34.453558840425615 36.0 36.0 36.0 32.0 36.0 43 34.44060491280895 36.0 36.0 36.0 32.0 36.0 44 34.38700175473915 36.0 36.0 36.0 32.0 36.0 45 34.356672730782286 36.0 36.0 36.0 32.0 36.0 46 34.34702834532566 36.0 36.0 36.0 32.0 36.0 47 34.32969056425759 36.0 36.0 36.0 32.0 36.0 48 34.2855005290937 36.0 36.0 36.0 32.0 36.0 49 34.272014052655074 36.0 36.0 36.0 32.0 36.0 50 33.65700308611121 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 3.0 19 4.0 20 15.0 21 48.0 22 207.0 23 618.0 24 1598.0 25 3766.0 26 7483.0 27 14403.0 28 23932.0 29 37737.0 30 55427.0 31 80314.0 32 116329.0 33 189501.0 34 394516.0 35 1244791.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.6711590097802 17.849692330090466 11.736607282719067 26.742541377410266 2 16.10009969244604 20.03011964936269 36.691473071061736 27.17830758712954 3 18.160417342335702 23.636561311436743 28.900606627944686 29.302414718282865 4 12.268201906027246 15.748749362530766 35.83325693683999 36.149791794601995 5 14.303680898220062 36.771021973167095 33.62474564574539 15.300551482867453 6 34.9112515991481 35.72656951462832 16.22057901484645 13.141599871377126 7 30.487729033999738 30.436915768374433 20.515337728550286 18.560017469075543 8 28.16364551027967 33.46748410184402 18.839383938393837 19.52948644948247 9 27.203917317656444 13.861671217491015 18.10580056194657 40.82861090290597 10 15.248078125295129 27.085914145283454 32.14048953616561 25.52551819325581 11 37.743107846203955 20.887707289791784 22.084606160336815 19.284578703667446 12 24.35527353539523 23.574691526373208 28.903462865229823 23.16657207300174 13 29.556186385317822 19.37723834769285 25.127678531118736 25.9388967358706 14 23.36753595974738 19.175460717347608 25.240073322273876 32.21693000063113 15 25.158965409532303 27.223649888187495 22.03203909705989 25.58534560522031 16 25.796836655108063 25.903992164656465 23.392103016708614 24.907068163526862 17 24.187344778833303 25.999254615922197 25.004272828999767 24.80912777624473 18 24.92923902467789 25.19569832237521 25.685358743403015 24.189703909543887 19 25.45666291824777 25.087472065372673 25.200108905312728 24.255756111066834 20 25.822367511807336 24.464316316884446 24.77417256496109 24.939143606347123 21 26.58123465639775 24.423214153268102 24.454172008662674 24.541379181671473 22 25.798593259660972 24.344494750982637 24.925830103948417 24.93108188540797 23 24.58331029907679 24.13464905006726 25.37347743564229 25.908563215213665 24 24.842929549330577 24.948334210169893 25.012323315897955 25.196412924601574 25 24.954909840411933 24.488920604924513 25.283935556660193 25.27223399800336 26 24.85207891151824 25.142369584577047 25.359638401295875 24.645913102608837 27 25.32931472315081 24.783098248937605 24.752645390515294 25.134941637396295 28 24.83756817805928 24.65969133922693 25.444818789986005 25.05792169272778 29 24.744498847342438 24.917397481659755 25.264162208679853 25.073941462317954 30 24.678329974085806 25.03979268643824 25.393976389288795 24.88790095018716 31 25.13419416009498 24.827128989025358 24.754704915668803 25.283971935210865 32 25.01140221963209 24.841589768868946 24.644273782265977 25.50273422923299 33 24.68207967323185 24.535852217207204 25.098786459540285 25.68328165002066 34 25.21679080050547 24.660181024867768 25.343527557067247 24.779500617559513 35 25.63742632943326 24.46722008179143 25.288221047864617 24.60713254091069 36 24.804980484227055 25.029854156914922 24.886065848687338 25.27909951017068 37 25.51837628258049 24.844376547941973 24.85898064335417 24.778266526123364 38 24.758791631536997 24.63863664634905 25.26318456782445 25.339387154289504 39 25.442516098090895 24.691847734196873 24.65618937445378 25.20944679325845 40 25.499437953783215 24.807706482880626 25.037316183245494 24.655539380090666 41 24.61882209855158 25.088407105738398 25.469400729738695 24.823370065971325 42 25.684171052437605 25.016446641015435 24.94066309908157 24.35871920746539 43 25.025337962348708 24.266166541358924 25.289083115887546 25.419412380404815 44 24.742175428509828 24.806994363931373 24.989887877523078 25.460942330035724 45 24.823936281219147 25.03060124948 25.014477143619253 25.1309853256816 46 24.764013389389657 24.750146728619775 25.09146928557674 25.394370596413836 47 24.76542578554202 24.79205393813331 25.466372743459864 24.976147532864807 48 25.475688759362434 25.102757617331644 24.647085977328366 24.77446764597755 49 24.753015297964094 25.213101326265814 24.89928275965008 25.13460061612001 50 24.887856740412253 25.20462660912966 24.8759709599979 25.031545690460188 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 16.0 1 28.0 2 40.0 3 129.0 4 218.0 5 229.0 6 240.0 7 228.0 8 216.0 9 307.5 10 399.0 11 595.5 12 792.0 13 1509.5 14 2227.0 15 2938.0 16 3649.0 17 3825.0 18 4001.0 19 4236.5 20 4472.0 21 5397.5 22 6323.0 23 7698.5 24 9074.0 25 11401.5 26 13729.0 27 17022.0 28 20315.0 29 23656.5 30 26998.0 31 30257.0 32 33516.0 33 38432.0 34 43348.0 35 49950.0 36 56552.0 37 66130.5 38 75709.0 39 83806.5 40 91904.0 41 100732.0 42 109560.0 43 115805.5 44 122051.0 45 133044.0 46 144037.0 47 153002.0 48 161967.0 49 167726.0 50 173485.0 51 170108.5 52 166732.0 53 164786.0 54 162840.0 55 161057.0 56 159274.0 57 153360.0 58 147446.0 59 135653.0 60 123860.0 61 108197.0 62 92534.0 63 79995.0 64 67456.0 65 57575.0 66 47694.0 67 40608.0 68 33522.0 69 29673.0 70 25824.0 71 19991.5 72 14159.0 73 11956.5 74 9754.0 75 7550.5 76 5347.0 77 4587.0 78 3827.0 79 3185.0 80 2543.0 81 2017.0 82 1491.0 83 1142.0 84 793.0 85 580.0 86 367.0 87 255.5 88 144.0 89 116.0 90 88.0 91 72.0 92 56.0 93 43.0 94 30.0 95 36.0 96 42.0 97 30.0 98 18.0 99 16.0 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008522623880944933 2 7.83160032303048E-4 3 2.303411859714847E-4 4 0.0 5 0.0 6 2.7640942316578163E-4 7 0.0 8 4.606823719429694E-5 9 0.0011056376926631265 10 0.0011977741670517203 11 0.0 12 2.303411859714847E-4 13 3.2247766036007857E-4 14 9.213647438859388E-5 15 0.004376482533458208 16 7.37091795108751E-4 17 0.0 18 2.303411859714847E-4 19 0.0 20 4.146141347486724E-4 21 0.0 22 4.606823719429694E-5 23 5.988870835258602E-4 24 5.067506091372663E-4 25 0.0019348659621604715 26 0.005067506091372663 27 0.005758529649287117 28 0.004146141347486724 29 0.0026258895200749256 30 0.003132640129212192 31 0.006633826155978758 32 0.002902298943240707 33 0.004698960193818288 34 0.0023955483341034406 35 0.002303411859714847 36 0.006495621444395867 37 0.0031787083664064886 38 0.0075091226626704 39 0.004330414296263912 40 0.0024416165712977376 41 0.0024416165712977376 42 0.0017045247761889866 43 0.0017045247761889866 44 0.001428115353023205 45 0.001382047115828908 46 8.752965066916418E-4 47 0.0026719577572692226 48 0.002349480096909144 49 5.528188463315633E-4 50 0.001474183590217502 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2170693.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.70600831935397 #Duplication Level Percentage of deduplicated Percentage of total 1 78.6839582788197 44.61853192758451 2 12.619170047487854 14.311655233923776 3 3.776020539913632 6.4236915645118176 4 1.5713843496661397 3.5642773602028304 5 0.8214869287660328 2.32916223084236 6 0.5208449121334628 1.7721021552320002 7 0.34896080293647697 1.3851721936111017 8 0.24692798930677065 1.1201840492728872 9 0.19927612461836547 1.0170138222411886 >10 1.0860133484661427 10.988193652474196 >50 0.07038836107342741 2.7651080388881826 >100 0.047387479234881576 5.709267910763099 >500 0.006053819806971148 2.368408557145803 >1k 0.0021270177700168525 1.6272313033063468 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 4.606823719429694E-5 0.0 0.0 0.0 4 0.0 4.606823719429694E-5 0.0 0.0 0.0 5 0.0 4.606823719429694E-5 0.0 0.0 0.0 6 0.0 4.606823719429694E-5 0.0 0.0 0.0 7 0.0 4.606823719429694E-5 0.0 0.0 0.0 8 0.0 4.606823719429694E-5 0.0 0.0 0.0 9 0.0 4.606823719429694E-5 0.0 0.0 0.0 10 0.0 4.606823719429694E-5 0.0 0.0 0.0 11 0.0 4.606823719429694E-5 0.0 0.0 0.0 12 0.0 4.606823719429694E-5 0.0 0.0 9.213647438859388E-5 13 0.0 4.606823719429694E-5 0.0 0.0 1.3820471158289082E-4 14 0.0 1.3820471158289082E-4 0.0 0.0 1.3820471158289082E-4 15 0.0 1.8427294877718776E-4 0.0 4.606823719429694E-5 1.8427294877718776E-4 16 0.0 1.8427294877718776E-4 0.0 4.606823719429694E-5 1.8427294877718776E-4 17 0.0 1.8427294877718776E-4 0.0 1.8427294877718776E-4 1.8427294877718776E-4 18 0.0 2.303411859714847E-4 0.0 2.303411859714847E-4 1.8427294877718776E-4 19 0.0 2.303411859714847E-4 0.0 2.303411859714847E-4 1.8427294877718776E-4 20 0.0 2.303411859714847E-4 0.0 2.7640942316578163E-4 2.7640942316578163E-4 21 0.0 2.303411859714847E-4 0.0 3.2247766036007857E-4 2.7640942316578163E-4 22 0.0 2.303411859714847E-4 0.0 4.1461413474867245E-4 2.7640942316578163E-4 23 0.0 2.303411859714847E-4 0.0 5.988870835258602E-4 2.7640942316578163E-4 24 0.0 2.303411859714847E-4 0.0 0.0011056376926631265 2.7640942316578163E-4 25 0.0 2.303411859714847E-4 0.0 0.001382047115828908 2.7640942316578163E-4 26 0.0 2.303411859714847E-4 0.0 0.0017966612505775806 3.2247766036007857E-4 27 0.0 2.303411859714847E-4 0.0 0.0025337530456863316 3.2247766036007857E-4 28 0.0 2.303411859714847E-4 0.0 0.004698960193818287 3.685458975543755E-4 29 0.0 2.303411859714847E-4 0.0 0.010042875708356732 4.606823719429694E-4 30 0.0 2.303411859714847E-4 0.0 0.018980113724050337 4.606823719429694E-4 31 0.0 2.303411859714847E-4 0.0 0.037269203890186224 5.067506091372663E-4 32 0.0 2.303411859714847E-4 0.0 0.057953842390425545 5.067506091372663E-4 33 0.0 2.303411859714847E-4 0.0 0.07896095855102495 5.067506091372663E-4 34 0.0 2.7640942316578163E-4 0.0 0.1036074654499738 5.528188463315633E-4 35 0.0 2.7640942316578163E-4 0.0 0.13124840776655197 5.528188463315633E-4 36 0.0 2.7640942316578163E-4 0.0 0.17376939069688804 5.528188463315633E-4 37 0.0 3.2247766036007857E-4 0.0 0.23725142155062923 5.528188463315633E-4 38 0.0 3.2247766036007857E-4 0.0 0.3291575547532516 6.449553207201571E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCGC 55 1.594754E-4 23.998745 6 GTATCAA 2735 0.0 22.925957 1 GGTATCA 1395 0.0 20.975744 1 GTATTAC 220 0.0 18.000715 1 CTATTAC 160 1.1023076E-9 17.875711 1 ATACGAA 535 0.0 17.270124 40 CAATACG 575 0.0 17.217283 38 TACACCG 155 1.441731E-8 17.031366 5 CGAATGC 560 0.0 16.891584 43 CGCAATA 600 0.0 16.867338 36 CGTCGTA 525 0.0 16.762186 10 TCTATCG 80 0.0019885085 16.500656 36 AACGCAG 3750 0.0 16.48447 6 ACCGTCG 510 0.0 16.391676 8 TCTAGCG 595 0.0 16.27068 28 GTACTAG 150 1.8387254E-7 16.133976 1 CCGTCGT 520 0.0 16.076824 9 GTATAGG 275 0.0 16.000637 1 CGCCGGT 635 0.0 15.93654 7 TAGCGGC 610 0.0 15.870214 30 >>END_MODULE