##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064207_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1468261 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.301513150591074 32.0 32.0 32.0 32.0 32.0 2 31.386142518257994 32.0 32.0 32.0 32.0 32.0 3 31.448251366752913 32.0 32.0 32.0 32.0 32.0 4 31.533460331644033 32.0 32.0 32.0 32.0 32.0 5 31.494056574410134 32.0 32.0 32.0 32.0 32.0 6 35.049448973990316 36.0 36.0 36.0 36.0 36.0 7 35.062319982618895 36.0 36.0 36.0 36.0 36.0 8 35.02064891732464 36.0 36.0 36.0 36.0 36.0 9 35.11263188220623 36.0 36.0 36.0 36.0 36.0 10 34.97977607523458 36.0 36.0 36.0 36.0 36.0 11 35.12026540240461 36.0 36.0 36.0 36.0 36.0 12 35.02949475604133 36.0 36.0 36.0 36.0 36.0 13 35.06278175338036 36.0 36.0 36.0 36.0 36.0 14 35.012732068753444 36.0 36.0 36.0 36.0 36.0 15 34.98669378264491 36.0 36.0 36.0 36.0 36.0 16 35.00402925637881 36.0 36.0 36.0 36.0 36.0 17 34.96848584822453 36.0 36.0 36.0 36.0 36.0 18 34.959236811438835 36.0 36.0 36.0 36.0 36.0 19 34.95959437729395 36.0 36.0 36.0 36.0 36.0 20 34.95186959266779 36.0 36.0 36.0 36.0 36.0 21 34.94621187922311 36.0 36.0 36.0 36.0 36.0 22 34.935114397235914 36.0 36.0 36.0 36.0 36.0 23 34.882005311044836 36.0 36.0 36.0 32.0 36.0 24 34.85625716408731 36.0 36.0 36.0 32.0 36.0 25 34.83931603441078 36.0 36.0 36.0 32.0 36.0 26 34.777423087584566 36.0 36.0 36.0 32.0 36.0 27 34.76112285213596 36.0 36.0 36.0 32.0 36.0 28 34.737358684865974 36.0 36.0 36.0 32.0 36.0 29 34.72424861792283 36.0 36.0 36.0 32.0 36.0 30 34.713256702997626 36.0 36.0 36.0 32.0 36.0 31 34.69292448685894 36.0 36.0 36.0 32.0 36.0 32 34.64656964940157 36.0 36.0 36.0 32.0 36.0 33 34.62943577470218 36.0 36.0 36.0 32.0 36.0 34 34.61908747831618 36.0 36.0 36.0 32.0 36.0 35 34.58059636536011 36.0 36.0 36.0 32.0 36.0 36 34.55201016712969 36.0 36.0 36.0 32.0 36.0 37 34.54476554236611 36.0 36.0 36.0 32.0 36.0 38 34.50501988406693 36.0 36.0 36.0 32.0 36.0 39 34.504000310571485 36.0 36.0 36.0 32.0 36.0 40 34.47986359373436 36.0 36.0 36.0 32.0 36.0 41 34.46361035265529 36.0 36.0 36.0 32.0 36.0 42 34.39950730830554 36.0 36.0 36.0 32.0 36.0 43 34.380572663852 36.0 36.0 36.0 32.0 36.0 44 34.33354083504227 36.0 36.0 36.0 32.0 36.0 45 34.29545904985558 36.0 36.0 36.0 32.0 36.0 46 34.268982149631434 36.0 36.0 36.0 32.0 36.0 47 34.23470145975409 36.0 36.0 36.0 32.0 36.0 48 34.18441203573479 36.0 36.0 36.0 32.0 36.0 49 34.16702616224227 36.0 36.0 36.0 32.0 36.0 50 33.579217182776084 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 4.0 20 22.0 21 78.0 22 214.0 23 586.0 24 1436.0 25 3298.0 26 6407.0 27 11290.0 28 18401.0 29 27902.0 30 39188.0 31 54391.0 32 76167.0 33 119580.0 34 244915.0 35 864379.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.12502767153799 18.25722099426816 12.014385794028398 26.603365540165452 2 15.749852716319712 20.917483679606065 36.968646454464654 26.36401714960957 3 17.84914745735584 24.935586802020087 29.11496981110229 28.100295929521778 4 12.393504969484308 16.472480029095646 36.30069858151923 34.833316419900825 5 14.07372394962476 37.06800085270943 33.70361264107676 15.154662556589052 6 33.39079359868579 36.07968882916593 17.06992149215977 13.459596079988504 7 29.4131148434201 31.02045959162546 21.439118412270304 18.12730715268413 8 27.648013534378425 33.183541618281765 19.81480131938395 19.35364352795586 9 27.591481791501813 14.224552747739985 18.72373987139731 39.46022558936089 10 15.492111665363522 27.209237701635423 32.319015095583566 24.979635537417487 11 36.54145959063136 21.441351367365886 22.92371724100824 19.09347180099451 12 24.43790609292632 23.819827550978708 29.301826651955377 22.440439704139596 13 29.261830718663116 20.037881728910666 25.44641458494239 25.253872967483826 14 23.541518957512206 19.51402240888346 25.94252913488579 31.00192949871855 15 24.844436210673145 27.040037923781917 22.86624238527511 25.249283480269824 16 25.172756683126167 26.101413247062833 23.992371871275328 24.733458198535672 17 23.750477605820763 25.934489848875643 25.631001572608685 24.68403097269491 18 24.32263082545663 25.571120528191987 26.323510782194358 23.78273786415702 19 25.238632640926923 25.176109697117884 26.032224515940968 23.55303314601423 20 25.491603644051175 24.662524791317043 25.550789508096685 24.2950820565351 21 26.16769089419388 24.562458581955116 25.199198235191155 24.07065228865985 22 25.41595181776512 24.550505053944843 25.501290984764953 24.53225214352509 23 24.427329622347102 24.50265723959018 25.819596486436602 25.250416651626118 24 24.513893760526994 25.08212162923319 25.803388934710664 24.60059567552915 25 24.68617081053101 24.68535350267498 25.929023623602486 24.69945206319152 26 24.456640934162113 25.257767769935878 26.086411630165742 24.199179665736263 27 24.80433137556865 25.1470026311649 25.474553032310272 24.57411296095618 28 24.345031776984214 24.99732666031422 26.054538854012492 24.60310270868907 29 24.394270652418218 25.106624983824062 25.916511718191295 24.582592645566432 30 24.41430500887814 25.280528097762385 25.911226777041207 24.393940116318273 31 24.687006397799696 25.085327835298717 25.397418947921924 24.830246818979663 32 24.511602151995035 25.183300311465796 25.382589382101717 24.922508154437452 33 24.396574858227954 24.902091129149802 25.726841401932433 24.97449261068981 34 24.848099308759057 24.972466829084563 25.808031308467548 24.37140255368883 35 25.25977104186305 24.960087616535986 25.65119846126183 24.12894288033913 36 24.563641639206253 25.300952066989336 25.480086147827162 24.655320145977246 37 25.05256375590257 25.152548976070975 25.454752260735305 24.340135007291156 38 24.567974645521588 25.116763149093785 25.7122773462803 24.602984859104325 39 24.759280890611322 25.117473377355342 25.361512867753483 24.76173286427985 40 25.067070782747873 25.133886155051165 25.5947147065334 24.204328355667556 41 24.318779793912455 25.45111022870691 25.803307562741324 24.42680241463931 42 25.06930075369252 25.45963256638229 25.40371520148641 24.06735147843878 43 24.674985901525904 24.89804146994641 25.607324123238374 24.81964850528931 44 24.509771202723254 25.22661439557348 25.37386522530671 24.88974917639655 45 24.427632210744406 25.44640090230296 25.406557361417693 24.719409525534942 46 24.494652466512786 25.171922707827772 25.4383628912574 24.895061934402047 47 24.56401793443429 25.182923465353348 25.610511109582447 24.64254749062992 48 25.06465280913646 25.561306255776522 24.997905637207328 24.376135297879685 49 24.495183401259727 25.533490072575898 25.20446025761175 24.766866268552622 50 24.454721298970195 25.712008935868795 25.136285620879423 24.69698414428159 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 42.0 1 50.0 2 58.0 3 152.0 4 246.0 5 302.0 6 358.0 7 339.0 8 320.0 9 489.5 10 659.0 11 877.5 12 1096.0 13 2006.0 14 2916.0 15 3891.0 16 4866.0 17 5068.5 18 5271.0 19 5237.0 20 5203.0 21 5705.0 22 6207.0 23 7184.5 24 8162.0 25 9300.0 26 10438.0 27 12831.5 28 15225.0 29 17600.5 30 19976.0 31 22250.0 32 24524.0 33 28187.0 34 31850.0 35 36856.5 36 41863.0 37 48330.5 38 54798.0 39 60778.5 40 66759.0 41 72934.0 42 79109.0 43 82005.5 44 84902.0 45 91936.5 46 98971.0 47 103723.0 48 108475.0 49 111590.5 50 114706.0 51 113295.5 52 111885.0 53 109260.0 54 106635.0 55 105273.0 56 103911.0 57 99672.0 58 95433.0 59 86567.5 60 77702.0 61 67767.5 62 57833.0 63 49957.5 64 42082.0 65 35140.0 66 28198.0 67 23944.5 68 19691.0 69 17313.5 70 14936.0 71 11551.5 72 8167.0 73 6911.5 74 5656.0 75 4472.0 76 3288.0 77 2849.5 78 2411.0 79 1985.0 80 1559.0 81 1198.0 82 837.0 83 699.5 84 562.0 85 402.5 86 243.0 87 164.5 88 86.0 89 66.0 90 46.0 91 38.0 92 30.0 93 24.0 94 18.0 95 21.5 96 25.0 97 23.5 98 22.0 99 13.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00994373616135006 2 4.086466915623312E-4 3 4.086466915623312E-4 4 0.0 5 0.0 6 0.0 7 6.81077819270552E-5 8 0.0 9 0.0012259400746869938 10 0.0011578322927599384 11 0.0 12 6.81077819270552E-5 13 4.767544734893864E-4 14 2.724311277082208E-4 15 0.0036097124421339256 16 7.491856011976073E-4 17 0.0 18 4.767544734893864E-4 19 0.0 20 3.4053890963527605E-4 21 0.0 22 1.362155638541104E-4 23 5.448622554164416E-4 24 8.172933831246624E-4 25 0.0017708023301034354 26 0.005380514772237361 27 0.006129700373434968 28 0.004086466915623312 29 0.002111341239738711 30 0.0032691735324986496 31 0.00681077819270552 32 0.0028605268409363184 33 0.004018359133696257 34 0.0021794490216657664 35 0.003064850186717484 36 0.005925377027653803 37 0.002996742404790429 38 0.008036718267392514 39 0.003814035787915091 40 0.0024518801493739876 41 0.00340538909635276 42 0.0015664789843222698 43 0.0011578322927599384 44 0.0012259400746869938 45 0.0012259400746869938 46 9.535089469787728E-4 47 0.0016345867662493248 48 0.0023156645855198768 49 3.4053890963527605E-4 50 0.0014302634204681592 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1468261.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.87924082831725 #Duplication Level Percentage of deduplicated Percentage of total 1 81.00082886369414 50.932706254135354 2 11.748779019911021 14.775086108633326 3 3.292776084966392 6.211417813209763 4 1.3094174700234071 3.2934070576963084 5 0.6751811857296969 2.12274401901232 6 0.42866040594928295 1.6172304539549518 7 0.2961938864045338 1.3037112700574147 8 0.2266035282176062 1.1398926258672997 9 0.14995606641363782 0.8486211252321241 >10 0.7728533659730419 8.614192604760639 >50 0.05042415885848228 2.183891292435835 >100 0.04505340077377609 5.466181617293402 >500 0.003163477648852304 1.395506154795512 >1k 1.0908543616732084E-4 0.0954116029157315 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.40538909635276E-4 2 0.0 0.0 0.0 0.0 3.40538909635276E-4 3 0.0 0.0 0.0 0.0 3.40538909635276E-4 4 0.0 0.0 0.0 0.0 3.40538909635276E-4 5 0.0 0.0 0.0 0.0 4.086466915623312E-4 6 0.0 0.0 0.0 0.0 4.086466915623312E-4 7 0.0 0.0 0.0 0.0 4.086466915623312E-4 8 0.0 0.0 0.0 0.0 4.086466915623312E-4 9 0.0 0.0 0.0 0.0 4.086466915623312E-4 10 0.0 0.0 0.0 0.0 4.086466915623312E-4 11 0.0 0.0 0.0 0.0 4.086466915623312E-4 12 0.0 0.0 0.0 0.0 6.81077819270552E-4 13 0.0 0.0 0.0 0.0 7.491856011976072E-4 14 0.0 0.0 0.0 0.0 7.491856011976072E-4 15 0.0 0.0 0.0 0.0 0.0010897245108328832 16 0.0 0.0 0.0 0.0 0.0011578322927599384 17 1.362155638541104E-4 0.0 0.0 0.0 0.0011578322927599384 18 1.362155638541104E-4 0.0 0.0 0.0 0.0011578322927599384 19 1.362155638541104E-4 0.0 0.0 0.0 0.0011578322927599384 20 1.362155638541104E-4 0.0 0.0 6.81077819270552E-5 0.0014302634204681592 21 1.362155638541104E-4 0.0 0.0 1.362155638541104E-4 0.0014983712023952144 22 1.362155638541104E-4 0.0 0.0 1.362155638541104E-4 0.0014983712023952144 23 1.362155638541104E-4 6.81077819270552E-5 0.0 3.40538909635276E-4 0.0014983712023952144 24 1.362155638541104E-4 6.81077819270552E-5 0.0 5.448622554164416E-4 0.0014983712023952144 25 1.362155638541104E-4 6.81077819270552E-5 0.0 6.81077819270552E-4 0.0014983712023952144 26 1.362155638541104E-4 6.81077819270552E-5 0.0 6.81077819270552E-4 0.0014983712023952144 27 1.362155638541104E-4 6.81077819270552E-5 0.0 0.0012259400746869936 0.0015664789843222696 28 1.362155638541104E-4 6.81077819270552E-5 0.0 0.00340538909635276 0.0015664789843222696 29 1.362155638541104E-4 6.81077819270552E-5 0.0 0.0066745626288514095 0.0015664789843222696 30 1.362155638541104E-4 6.81077819270552E-5 0.0 0.014234526422754537 0.0015664789843222696 31 1.362155638541104E-4 6.81077819270552E-5 0.0 0.03167011859608067 0.0015664789843222696 32 1.362155638541104E-4 6.81077819270552E-5 0.0 0.0516938064826349 0.0015664789843222696 33 1.362155638541104E-4 6.81077819270552E-5 0.0 0.07008290760293981 0.0015664789843222696 34 1.362155638541104E-4 6.81077819270552E-5 0.0 0.09133253556418103 0.0015664789843222696 35 1.362155638541104E-4 6.81077819270552E-5 0.0 0.11748592382417022 0.0015664789843222696 36 1.362155638541104E-4 6.81077819270552E-5 0.0 0.1538554793732177 0.0015664789843222696 37 1.362155638541104E-4 6.81077819270552E-5 0.0 0.20745630374981014 0.0015664789843222696 38 1.362155638541104E-4 6.81077819270552E-5 0.0 0.2833964805984767 0.0015664789843222696 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2670 0.0 23.15458 1 ACGTAAC 80 8.987199E-5 19.25085 1 GTATTAC 140 4.081812E-9 18.857975 1 ACGATTA 60 0.007413867 18.332893 40 AACGCAG 3375 0.0 17.860312 6 TACCGTC 260 0.0 17.768805 7 ACTGCGC 100 2.4833877E-5 17.600176 8 ATACCGT 230 0.0 17.21698 6 ACCGTCG 220 1.8189894E-12 17.00017 8 CCGTCGT 235 0.0 16.851807 9 CGTCGTA 235 0.0 16.851807 10 GTATTAG 295 0.0 16.407503 1 GGCGTTA 245 0.0 16.162878 42 TATCAAC 3850 0.0 15.999617 2 TCAACGC 3800 0.0 15.9206705 4 GACGAAA 265 0.0 15.773744 22 TGACGAA 280 0.0 15.714443 21 CAACGCA 3875 0.0 15.669301 5 ATCAACG 3905 0.0 15.60526 3 CTTACAC 285 0.0 15.438226 3 >>END_MODULE