FastQCFastQC Report
Thu 2 Feb 2017
SRR4064206_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064206_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1643875
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCTAA13550.020.9435061
ACCGTCG3050.020.916898
TTAGGAC14650.020.8719463
CCGTAGA654.929959E-420.30967135
GTACGTT550.004483335720.00073240
TAGGACG24700.019.5934754
GGACCGA901.00305515E-519.5538946
TGTAGGA25950.019.4967842
CGTCGTA3500.019.4846510
GTATCAA42650.019.1876981
TACCGTC3350.019.0431567
AGGACGT25200.018.9428335
TAGGACC14100.018.8778274
CTGTAGG26550.018.4773331
GGACGTG24450.018.4442396
TATACGG600.007407740718.33567836
ATACCGT3600.018.3317766
TAGGACA8550.018.2674524
CCGTCGT3500.018.228139
GTCGTAG3750.018.18567511
Produced by FastQC (version 0.11.5)