##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064206_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1643875 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.289613261348947 32.0 32.0 32.0 32.0 32.0 2 31.418911413580716 32.0 32.0 32.0 32.0 32.0 3 31.48899155957722 32.0 32.0 32.0 32.0 32.0 4 31.56413291764885 32.0 32.0 32.0 32.0 32.0 5 31.524706562238613 32.0 32.0 32.0 32.0 32.0 6 35.09561797581933 36.0 36.0 36.0 36.0 36.0 7 35.116096418523306 36.0 36.0 36.0 36.0 36.0 8 35.064766481636376 36.0 36.0 36.0 36.0 36.0 9 35.172670063113074 36.0 36.0 36.0 36.0 36.0 10 35.03603072009733 36.0 36.0 36.0 36.0 36.0 11 35.17265911337541 36.0 36.0 36.0 36.0 36.0 12 35.08510196943198 36.0 36.0 36.0 36.0 36.0 13 35.122879781005246 36.0 36.0 36.0 36.0 36.0 14 35.077923199756675 36.0 36.0 36.0 36.0 36.0 15 35.043932780777126 36.0 36.0 36.0 36.0 36.0 16 35.0598530910197 36.0 36.0 36.0 36.0 36.0 17 35.03339061668314 36.0 36.0 36.0 36.0 36.0 18 35.02821078245 36.0 36.0 36.0 36.0 36.0 19 35.01550908676146 36.0 36.0 36.0 36.0 36.0 20 35.00191194585963 36.0 36.0 36.0 36.0 36.0 21 34.999769447190324 36.0 36.0 36.0 36.0 36.0 22 34.97382708539275 36.0 36.0 36.0 36.0 36.0 23 34.939483233214204 36.0 36.0 36.0 36.0 36.0 24 34.905658885255875 36.0 36.0 36.0 32.0 36.0 25 34.88271188502775 36.0 36.0 36.0 32.0 36.0 26 34.83121466048209 36.0 36.0 36.0 32.0 36.0 27 34.81504493954832 36.0 36.0 36.0 32.0 36.0 28 34.779039160520114 36.0 36.0 36.0 32.0 36.0 29 34.74454870352064 36.0 36.0 36.0 32.0 36.0 30 34.72049821306364 36.0 36.0 36.0 32.0 36.0 31 34.70682807391073 36.0 36.0 36.0 32.0 36.0 32 34.66245182875827 36.0 36.0 36.0 32.0 36.0 33 34.65585096190404 36.0 36.0 36.0 32.0 36.0 34 34.637989506501405 36.0 36.0 36.0 32.0 36.0 35 34.58770405292373 36.0 36.0 36.0 32.0 36.0 36 34.558980457759866 36.0 36.0 36.0 32.0 36.0 37 34.5237016196487 36.0 36.0 36.0 32.0 36.0 38 34.477369021367196 36.0 36.0 36.0 32.0 36.0 39 34.435601247053455 36.0 36.0 36.0 32.0 36.0 40 34.434667477758346 36.0 36.0 36.0 32.0 36.0 41 34.41079279142271 36.0 36.0 36.0 32.0 36.0 42 34.34915002661395 36.0 36.0 36.0 32.0 36.0 43 34.35438521785416 36.0 36.0 36.0 32.0 36.0 44 34.25971743593643 36.0 36.0 36.0 32.0 36.0 45 34.22830628849517 36.0 36.0 36.0 32.0 36.0 46 34.154165614782144 36.0 36.0 36.0 32.0 36.0 47 34.13460695004182 36.0 36.0 36.0 32.0 36.0 48 34.081516538666264 36.0 36.0 36.0 32.0 36.0 49 34.04299353661319 36.0 36.0 36.0 32.0 36.0 50 33.46849121739792 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 5.0 19 7.0 20 18.0 21 45.0 22 139.0 23 488.0 24 1242.0 25 3041.0 26 6262.0 27 11771.0 28 19841.0 29 30712.0 30 43683.0 31 60669.0 32 87337.0 33 137893.0 34 282115.0 35 958605.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.93558199537273 19.497266283514413 12.377314320513126 26.189837400599732 2 14.196803883518768 21.589785080328735 40.37004142663349 23.843369609518998 3 17.88340927202273 25.83020555153388 30.238461678843215 26.047923497600173 4 11.197080069956657 17.198874610295796 38.69223633183788 32.911808987909666 5 12.357083111550454 38.80623526728005 35.07590297315794 13.760778648011557 6 31.28081904286835 38.627446209250124 17.692214104521646 12.399520643359876 7 27.693076046628907 32.032340697851964 22.10219402593753 18.172389229581604 8 25.59093605049046 36.49036575165387 20.197581932932856 17.72111626492282 9 26.984955467429266 14.350553242899455 19.691541761945867 38.97294952772541 10 14.914271635880294 27.897959369895766 33.7681851501501 23.419583844073838 11 35.47656328891387 21.449819146722923 25.246034671757084 17.827582892606124 12 24.26171169253043 24.549447340726456 31.13786369968428 20.05097726705883 13 29.052517214046684 20.86441615197392 26.533021952586015 23.550044681393377 14 21.665481457509188 22.115516222968562 26.747382553275102 29.471619766247148 15 23.299430532717448 30.994630180853466 23.129703610560057 22.57623567586903 16 22.931163804194885 26.90413228871819 27.44298629018669 22.721717616900232 17 21.47413884875675 27.825960003041594 27.58427496007908 23.115626188122576 18 21.966936477790767 26.349227978436197 30.231113728247923 21.45272181552511 19 24.628666569741092 25.399407375143944 26.92203108147649 23.049894973638473 20 24.280613942612145 26.735131248452582 27.103470049584306 21.88078475935097 21 24.769462398296707 25.274610295794997 25.98165918941525 23.974268116493043 22 23.99496555088772 27.13705551642036 26.68696019281283 22.18101873987909 23 22.641803265724253 26.7718944777603 27.383989653632725 23.202312602882724 24 23.811539956602434 26.54441863138896 27.470707859679987 22.173333552328618 25 23.332061920830544 26.56418716895369 27.88408367962595 22.21966723058982 26 21.582407313900816 27.58377976534487 28.892536321903133 21.941276598851182 27 22.51645919543097 27.232592066248035 27.560863434000787 22.690085304320213 28 21.816284877372176 27.378900653670318 27.48499660845787 23.319817860499636 29 22.64718532158759 26.050094018295088 27.023674603623615 24.279046056493712 30 22.1076568457054 26.934226063193933 27.740225830805144 23.217891260295524 31 23.634269736746045 25.82330739242798 27.135196892931713 23.40722597789426 32 22.25925666817738 27.549207179640046 27.088632236595966 23.10290391558661 33 22.0899058089643 27.03829632428046 28.144279033719087 22.727518833036154 34 22.88026143933988 26.95332770012343 28.363151020517414 21.803259840019273 35 23.045074223364818 27.367805029985 27.60882869313101 21.978292053519176 36 21.857256621609043 27.181920332021896 27.780430930064053 23.180392116305004 37 22.83267692824318 27.10861770456539 26.513777206743878 23.544928160447547 38 22.732501936134632 27.717539098360504 26.90986829417566 22.640090671329208 39 23.583901885575756 26.2948847027762 26.683740977433317 23.43747243421473 40 24.439462838197496 26.639332045686125 27.386431037367114 21.53477407874926 41 23.1759189300006 25.978425782965715 28.63413987227265 22.21151541476104 42 23.47570638516097 28.157038423143067 27.104129570812503 21.263125620883464 43 21.869804501746202 27.469217100576632 28.02541106219481 22.63556733548235 44 21.702913825019635 27.724741810855352 27.063368804874887 23.50897555925013 45 21.947360352731625 27.87306187403276 27.321553712733966 22.85802406050165 46 22.636701367576375 26.30678945918045 26.828671837027183 24.227837336215984 47 23.495227017780362 26.72359043116223 26.98079370448147 22.800388846575935 48 22.882864906922038 27.18231795488239 26.198157116551098 23.736660021644482 49 22.943105929816493 26.984564397741416 26.864602989788683 23.20772668265341 50 22.224466269835236 28.298177150661097 26.223663279303832 23.253693300199835 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 249.0 1 157.5 2 66.0 3 208.5 4 351.0 5 409.0 6 467.0 7 433.0 8 399.0 9 507.0 10 615.0 11 1006.0 12 1397.0 13 2479.0 14 3561.0 15 4684.5 16 5808.0 17 6549.0 18 7290.0 19 7382.5 20 7475.0 21 8572.0 22 9669.0 23 10952.5 24 12236.0 25 15386.0 26 18536.0 27 25561.5 28 32587.0 29 38839.5 30 45092.0 31 50374.5 32 55657.0 33 65966.0 34 76275.0 35 89014.5 36 101754.0 37 106072.0 38 110390.0 39 106758.0 40 103126.0 41 101407.0 42 99688.0 43 93751.0 44 87814.0 45 91371.0 46 94928.0 47 96993.0 48 99058.0 49 98622.5 50 98187.0 51 94568.0 52 90949.0 53 87921.5 54 84894.0 55 84888.0 56 84882.0 57 82578.0 58 80274.0 59 72002.0 60 63730.0 61 56261.0 62 48792.0 63 42463.0 64 36134.0 65 30343.0 66 24552.0 67 21566.5 68 18581.0 69 16884.5 70 15188.0 71 11708.0 72 8228.0 73 6984.0 74 5740.0 75 4394.0 76 3048.0 77 2732.5 78 2417.0 79 2012.0 80 1607.0 81 1277.5 82 948.0 83 804.0 84 660.0 85 467.0 86 274.0 87 196.0 88 118.0 89 93.5 90 69.0 91 54.0 92 39.0 93 28.5 94 18.0 95 24.5 96 31.0 97 22.0 98 13.0 99 13.5 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008638126378222187 2 3.041593795148658E-4 3 3.041593795148658E-4 4 0.0 5 0.0 6 3.041593795148658E-4 7 1.216637518059463E-4 8 0.0 9 0.0013383012698654094 10 0.0012166375180594632 11 6.083187590297315E-5 12 3.041593795148658E-4 13 8.516462626416241E-4 14 1.216637518059463E-4 15 0.003528248802372443 16 9.733100144475704E-4 17 0.0 18 5.474868831267585E-4 19 1.216637518059463E-4 20 4.866550072237852E-4 21 0.0 22 6.083187590297315E-5 23 7.908143867386511E-4 24 2.433275036118926E-4 25 0.0020682837807010873 26 0.006144019466200289 27 0.006874001977035967 28 0.004866550072237853 29 0.0027982662915367654 30 0.004744886320431906 31 0.00845563075051327 32 0.0036499125541783898 33 0.0053532050794616376 34 0.0031632575469546045 35 0.0032240894228575774 36 0.0077864801155805635 37 0.00444072694091704 38 0.00827313512280435 39 0.004866550072237853 40 0.003041593795148658 41 0.003710744430081362 42 0.0029199300433427116 43 0.0014599650216713558 44 0.0013383012698654094 45 0.0011558056421564899 46 0.001094973766253517 47 0.002372443160215953 48 0.0023116112843129797 49 7.908143867386511E-4 50 0.0012166375180594632 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1643875.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.55318880140365 #Duplication Level Percentage of deduplicated Percentage of total 1 75.61292174315913 38.224743087076824 2 14.142540786413694 14.299010690142461 3 4.5392718643174055 6.884240027332118 4 1.967722264991456 3.9789854068335475 5 1.02514229042181 2.5912105877998566 6 0.5864810510319525 1.7789092380758365 7 0.38155339988997866 1.350211874371889 8 0.251157912159117 1.0157466681876952 9 0.19572905519157666 0.8905255092918116 >10 1.0733571102310582 10.068578145953884 >50 0.1117493443418536 3.9567842854017288 >100 0.10014310328846265 10.23508989250694 >500 0.009808277619357778 3.2386903152177857 >1k 0.0024217969430513028 1.4872742718077252 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 6.083187590297316E-5 0.0 6 0.0 0.0 0.0 6.083187590297316E-5 0.0 7 0.0 0.0 0.0 6.083187590297316E-5 0.0 8 0.0 0.0 0.0 6.083187590297316E-5 0.0 9 0.0 0.0 0.0 1.2166375180594632E-4 0.0 10 0.0 0.0 0.0 1.2166375180594632E-4 0.0 11 0.0 0.0 0.0 1.2166375180594632E-4 0.0 12 0.0 0.0 0.0 1.2166375180594632E-4 0.0 13 0.0 0.0 0.0 1.2166375180594632E-4 0.0 14 0.0 0.0 0.0 1.2166375180594632E-4 0.0 15 0.0 0.0 0.0 1.8249562770891948E-4 0.0 16 0.0 0.0 0.0 1.8249562770891948E-4 0.0 17 0.0 0.0 0.0 1.8249562770891948E-4 0.0 18 0.0 0.0 0.0 1.8249562770891948E-4 0.0 19 0.0 0.0 0.0 2.4332750361189264E-4 6.083187590297316E-5 20 0.0 0.0 0.0 3.041593795148658E-4 6.083187590297316E-5 21 0.0 0.0 0.0 4.258231313208121E-4 6.083187590297316E-5 22 0.0 0.0 0.0 6.691506349327047E-4 6.083187590297316E-5 23 0.0 0.0 0.0 0.0014599650216713558 1.2166375180594632E-4 24 0.0 0.0 0.0 0.0024332750361189264 1.2166375180594632E-4 25 0.0 0.0 0.0 0.002980761919245685 1.2166375180594632E-4 26 0.0 0.0 0.0 0.004136567561402175 1.2166375180594632E-4 27 0.0 0.0 0.0 0.005414036955364611 1.2166375180594632E-4 28 0.0 0.0 0.0 0.010098091399893544 1.2166375180594632E-4 29 0.0 0.0 0.0 0.018918713405824652 1.2166375180594632E-4 30 0.0 0.0 0.0 0.03516082427191849 1.2166375180594632E-4 31 0.0 0.0 0.0 0.07470154360885103 1.2166375180594632E-4 32 0.0 0.0 0.0 0.11679720173370846 1.2166375180594632E-4 33 0.0 0.0 0.0 0.15901452361037183 1.2166375180594632E-4 34 0.0 0.0 0.0 0.20457759866169872 1.2166375180594632E-4 35 0.0 0.0 0.0 0.2547638962816516 1.2166375180594632E-4 36 0.0 0.0 0.0 0.32441639419055585 1.2166375180594632E-4 37 0.0 0.0 0.0 0.4334879476845867 1.2166375180594632E-4 38 0.0 0.0 0.0 0.5749828910349023 1.2166375180594632E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCCTAA 1355 0.0 20.943506 1 ACCGTCG 305 0.0 20.91689 8 TTAGGAC 1465 0.0 20.871946 3 CCGTAGA 65 4.929959E-4 20.309671 35 GTACGTT 55 0.0044833357 20.000732 40 TAGGACG 2470 0.0 19.593475 4 GGACCGA 90 1.00305515E-5 19.553894 6 TGTAGGA 2595 0.0 19.496784 2 CGTCGTA 350 0.0 19.48465 10 GTATCAA 4265 0.0 19.187698 1 TACCGTC 335 0.0 19.043156 7 AGGACGT 2520 0.0 18.942833 5 TAGGACC 1410 0.0 18.877827 4 CTGTAGG 2655 0.0 18.477333 1 GGACGTG 2445 0.0 18.444239 6 TATACGG 60 0.0074077407 18.335678 36 ATACCGT 360 0.0 18.331776 6 TAGGACA 855 0.0 18.267452 4 CCGTCGT 350 0.0 18.22813 9 GTCGTAG 375 0.0 18.185675 11 >>END_MODULE