FastQCFastQC Report
Thu 2 Feb 2017
SRR4064202_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4064202_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1538641
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAACGG450.001399416424.4413573
CTAGATA2950.020.878723
ATACCGT2800.020.4259916
GTATCAA25950.019.8369331
TCGCACG3300.019.33277522
TACCGTC3000.019.064267
ACCGTCG2900.018.9631238
CCGATCG3150.018.85476118
TAGGACG1901.8189894E-1218.5239754
CGTCGTA3100.018.45168110
GATCGCA3350.018.3875320
ATCGCAC3350.018.3875321
TCTAGAT3650.018.0799082
ATAGCGT2350.017.7849886
TAGATAA3500.017.5977784
GCCGATC3700.017.24106617
CCGTCGT3250.016.9225889
CGTATAT2251.8189894E-1216.62228210
CGATCGC3600.016.49845119
CGCAATA3250.016.24938436
Produced by FastQC (version 0.11.5)