##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064180_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 893548 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.26363552937279 32.0 32.0 32.0 32.0 32.0 2 31.409801152260428 32.0 32.0 32.0 32.0 32.0 3 31.497370034961747 32.0 32.0 32.0 32.0 32.0 4 31.570351005206213 32.0 32.0 32.0 32.0 32.0 5 31.518005747872525 32.0 32.0 32.0 32.0 32.0 6 35.10452824022884 36.0 36.0 36.0 36.0 36.0 7 35.13699655754363 36.0 36.0 36.0 36.0 36.0 8 35.08005389749627 36.0 36.0 36.0 36.0 36.0 9 35.19588986825554 36.0 36.0 36.0 36.0 36.0 10 35.05077063571291 36.0 36.0 36.0 36.0 36.0 11 35.19682770259684 36.0 36.0 36.0 36.0 36.0 12 35.11214506663324 36.0 36.0 36.0 36.0 36.0 13 35.1393680026143 36.0 36.0 36.0 36.0 36.0 14 35.091458992689816 36.0 36.0 36.0 36.0 36.0 15 35.06035825719491 36.0 36.0 36.0 36.0 36.0 16 35.07855313872338 36.0 36.0 36.0 36.0 36.0 17 35.04084727401326 36.0 36.0 36.0 36.0 36.0 18 35.043835361950336 36.0 36.0 36.0 36.0 36.0 19 35.03685644195947 36.0 36.0 36.0 36.0 36.0 20 35.028498748808126 36.0 36.0 36.0 36.0 36.0 21 35.027950373119296 36.0 36.0 36.0 36.0 36.0 22 35.00298920707114 36.0 36.0 36.0 36.0 36.0 23 34.96654124904314 36.0 36.0 36.0 36.0 36.0 24 34.953005322601584 36.0 36.0 36.0 36.0 36.0 25 34.91222855403403 36.0 36.0 36.0 32.0 36.0 26 34.86942727195405 36.0 36.0 36.0 32.0 36.0 27 34.847134121502144 36.0 36.0 36.0 32.0 36.0 28 34.822933966613995 36.0 36.0 36.0 32.0 36.0 29 34.800365509183614 36.0 36.0 36.0 32.0 36.0 30 34.782839869822325 36.0 36.0 36.0 32.0 36.0 31 34.76470542153304 36.0 36.0 36.0 32.0 36.0 32 34.71692399289126 36.0 36.0 36.0 32.0 36.0 33 34.690640010385565 36.0 36.0 36.0 32.0 36.0 34 34.66718967531683 36.0 36.0 36.0 32.0 36.0 35 34.62768536217416 36.0 36.0 36.0 32.0 36.0 36 34.59087032817487 36.0 36.0 36.0 32.0 36.0 37 34.571715229623926 36.0 36.0 36.0 32.0 36.0 38 34.528641997967654 36.0 36.0 36.0 32.0 36.0 39 34.49686642463527 36.0 36.0 36.0 32.0 36.0 40 34.48600410946026 36.0 36.0 36.0 32.0 36.0 41 34.455559186523836 36.0 36.0 36.0 32.0 36.0 42 34.39862995608518 36.0 36.0 36.0 32.0 36.0 43 34.37364081168555 36.0 36.0 36.0 32.0 36.0 44 34.307026595101775 36.0 36.0 36.0 32.0 36.0 45 34.25460523665209 36.0 36.0 36.0 32.0 36.0 46 34.211159333354225 36.0 36.0 36.0 32.0 36.0 47 34.15789750522636 36.0 36.0 36.0 32.0 36.0 48 34.11102145603817 36.0 36.0 36.0 32.0 36.0 49 34.05963305832479 36.0 36.0 36.0 32.0 36.0 50 33.48971963453558 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 1.0 20 9.0 21 33.0 22 91.0 23 295.0 24 758.0 25 1668.0 26 3429.0 27 6364.0 28 10453.0 29 16031.0 30 22826.0 31 32089.0 32 45883.0 33 72398.0 34 151043.0 35 530175.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.19882391653255 17.965268155536705 11.807618352632533 26.02828957529822 2 15.272856685609918 20.557195712363995 38.58402365407041 25.585923947955674 3 18.15713607835764 25.112585390310944 29.20482930890924 27.52544922242218 4 11.723488833280362 16.28664604475641 36.80205204421027 35.187813077752956 5 13.18194433874845 38.229507536248754 34.08065375335181 14.507894371650993 6 33.37750182418851 36.5910952741207 17.10450921494984 12.926893686740948 7 29.418229350857484 31.257190436327985 21.056507316898475 18.268072895916056 8 27.60209860018712 34.33257082999459 19.4122755576645 18.653055012153796 9 27.53018358603833 13.840466821557593 18.518978615203487 40.110370977200596 10 15.159383082327688 27.71843198785951 33.16520039975871 23.956984530054086 11 36.648995520101344 21.016689664897314 23.37470776579184 18.9596070492095 12 24.574169490614942 24.071118731170568 30.063298222367465 21.29141355584703 13 29.910681810805702 20.322266204239956 25.421382423084626 24.345669561869716 14 22.720898714443514 20.190746276340366 26.494863705495987 30.593491303720132 15 24.20143144134616 28.83408598720768 23.07575223417888 23.888730337267276 16 24.216124386010268 26.306795099497393 25.570175291340856 23.906905223151483 17 22.966981068728263 26.689109034993088 26.40372984999127 23.940180046287384 18 23.43306716505604 25.696971053500384 28.06920748255544 22.800754298888137 19 24.93900719379373 25.3581228988258 26.490015085927116 23.21285482145335 20 25.2629705855691 24.900592138469303 26.58434252037679 23.2520947555848 21 25.660960575145374 24.66179768742138 25.776231383204934 23.901010354228312 22 24.951205755034984 25.2834766571018 26.187513149825193 23.577804438038026 23 23.711081764666382 25.514694361752134 26.73422566421201 24.03999820936947 24 24.38928581021192 25.386326806514287 26.683856642761857 23.54053074051194 25 24.26583162475043 25.396294240359563 26.730779561468694 23.607094573421314 26 23.4787903071463 26.16983199456509 27.133588439847205 23.217789258441403 27 24.00650040347718 25.946324664263337 26.36155360538477 23.685621326874713 28 23.397137808040416 25.768233407311158 26.772026309692887 24.06260247495554 29 23.57628493886573 25.731456870261045 26.463389384740214 24.228868806133015 30 23.526791560017863 25.93907839764345 26.82133028318685 23.71279975915184 31 24.149092626625986 25.611836258671367 26.23357785144909 24.00549326325356 32 23.637667972732654 26.151649146132783 26.125796426057303 24.08488645507726 33 23.44567703926546 25.763507433621186 26.658295169153494 24.132520357959862 34 23.919558959804103 25.888392477426457 26.77432279379177 23.417725768977665 35 24.204304962245125 25.98835849392352 26.466463800198536 23.34087274363282 36 23.441711062362895 26.238416080941935 26.558065093790574 23.761807762904596 37 24.162491200463787 26.136049503476727 25.883003381036424 23.81845591502306 38 23.71833615386682 26.48313052354474 26.216187175974426 23.582346146614018 39 24.26063317220686 25.929909423716367 25.935057711183312 23.874399692893462 40 24.684927674099775 25.984947259449932 26.31028790464732 23.019837161802972 41 23.940589760004297 25.914029519337088 26.602209697420083 23.543171023238532 42 24.18466552288734 26.68441651026436 26.081750004756422 23.049167962091886 43 23.59476999833247 26.109495185985583 26.45038761685302 23.84534719882892 44 23.257021604247434 26.58495312961653 26.037124745950884 24.120900520185153 45 23.641853583635317 26.593056335852914 25.861131193664704 23.90395888684706 46 23.61902907318995 26.04007887745121 25.969908386660666 24.370983662698173 47 24.268683843559113 25.938361054966503 25.907248362106976 23.885706739367404 48 24.060828603948174 26.426845523414517 25.49133937754539 24.020986495091922 49 23.98482895078474 26.418620683480615 25.516035024576293 24.080515341158353 50 23.64076088963698 27.017133110920355 25.3785814290015 23.96352457044116 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 20.0 1 17.5 2 15.0 3 56.0 4 97.0 5 141.5 6 186.0 7 176.5 8 167.0 9 261.5 10 356.0 11 547.5 12 739.0 13 1339.5 14 1940.0 15 2750.5 16 3561.0 17 4064.5 18 4568.0 19 4641.5 20 4715.0 21 5082.5 22 5450.0 23 6073.0 24 6696.0 25 7122.0 26 7548.0 27 9021.5 28 10495.0 29 12434.0 30 14373.0 31 17058.5 32 19744.0 33 23589.5 34 27435.0 35 31593.0 36 35751.0 37 38700.5 38 41650.0 39 42954.0 40 44258.0 41 46537.0 42 48816.0 43 50258.0 44 51700.0 45 55081.0 46 58462.0 47 60832.0 48 63202.0 49 64447.5 50 65693.0 51 64273.0 52 62853.0 53 61364.0 54 59875.0 55 58441.0 56 57007.0 57 54601.5 58 52196.0 59 47333.0 60 42470.0 61 37022.5 62 31575.0 63 27054.5 64 22534.0 65 18983.0 66 15432.0 67 13009.0 68 10586.0 69 9382.0 70 8178.0 71 6438.5 72 4699.0 73 4006.5 74 3314.0 75 2577.5 76 1841.0 77 1601.0 78 1361.0 79 1097.5 80 834.0 81 662.0 82 490.0 83 399.5 84 309.0 85 243.5 86 178.0 87 120.0 88 62.0 89 47.5 90 33.0 91 30.5 92 28.0 93 24.0 94 20.0 95 15.5 96 11.0 97 11.0 98 11.0 99 12.5 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00828159203534673 2 2.2382681176612784E-4 3 4.4765362353225567E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0017906144941290227 10 0.0010072206529475754 11 1.1191340588306392E-4 12 0.0 13 1.1191340588306392E-4 14 5.595670294153195E-4 15 0.0048122764529717485 16 7.833938411814475E-4 17 0.0 18 3.3574021764919175E-4 19 0.0 20 7.833938411814475E-4 21 0.0 22 0.0 23 8.953072470645113E-4 24 4.4765362353225567E-4 25 0.002238268117661278 26 0.007274371382399155 27 0.007274371382399155 28 0.004140796017673365 29 0.0025740083353104704 30 0.004364622829439492 31 0.010072206529475753 32 0.002797835147076598 33 0.004476536235322556 34 0.002685921741193534 35 0.0023501815235443422 36 0.007610111600048346 37 0.003916969205907238 38 0.011191340588306392 39 0.005259930076504005 40 0.0025740083353104704 41 0.0035812289882580454 42 0.0021263547117782145 43 0.0012310474647137032 44 0.002238268117661278 45 0.001566787682362895 46 0.001119134058830639 47 0.0024620949294274063 48 0.0023501815235443422 49 4.4765362353225567E-4 50 0.001678701088245959 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 893548.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.601147125466795 #Duplication Level Percentage of deduplicated Percentage of total 1 76.79976332930377 48.07753283378775 2 14.328714447427252 17.939879224843903 3 4.460685624370074 8.377321111549369 4 1.8233288762488389 4.565699169606624 5 0.8702976725037279 2.72408163196786 6 0.45086588221332735 1.6934832855773934 7 0.2962254267680094 1.2980836066385841 8 0.18890156923217435 0.9460363942187919 9 0.12792627121612232 0.7207498193051557 >10 0.5580319389973182 6.189931156844143 >50 0.057626882168464504 2.546486795061279 >100 0.03637167501196799 4.374482365813804 >500 0.001080346747741204 0.418184680923209 >1k 1.8005779129020067E-4 0.12804792386220093 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1136 0.12713362908316062 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 936 0.10475094790654783 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1191340588306392E-4 2 0.0 0.0 0.0 0.0 1.1191340588306392E-4 3 0.0 0.0 0.0 0.0 1.1191340588306392E-4 4 0.0 0.0 0.0 0.0 1.1191340588306392E-4 5 0.0 0.0 0.0 0.0 1.1191340588306392E-4 6 0.0 0.0 0.0 0.0 1.1191340588306392E-4 7 0.0 0.0 0.0 0.0 1.1191340588306392E-4 8 0.0 0.0 0.0 0.0 1.1191340588306392E-4 9 0.0 0.0 0.0 0.0 1.1191340588306392E-4 10 0.0 0.0 0.0 0.0 2.2382681176612784E-4 11 0.0 0.0 0.0 0.0 2.2382681176612784E-4 12 0.0 0.0 0.0 0.0 2.2382681176612784E-4 13 0.0 0.0 0.0 0.0 6.714804352983835E-4 14 0.0 0.0 0.0 0.0 6.714804352983835E-4 15 0.0 0.0 0.0 1.1191340588306392E-4 8.953072470645113E-4 16 0.0 0.0 0.0 1.1191340588306392E-4 8.953072470645113E-4 17 0.0 0.0 0.0 1.1191340588306392E-4 8.953072470645113E-4 18 0.0 0.0 0.0 2.2382681176612784E-4 0.0010072206529475752 19 0.0 0.0 0.0 2.2382681176612784E-4 0.0010072206529475752 20 0.0 0.0 0.0 2.2382681176612784E-4 0.0011191340588306393 21 0.0 0.0 0.0 3.3574021764919175E-4 0.0011191340588306393 22 0.0 0.0 0.0 4.4765362353225567E-4 0.0011191340588306393 23 0.0 0.0 0.0 0.0020144413058951504 0.0011191340588306393 24 0.0 0.0 0.0 0.0034693155823749817 0.0011191340588306393 25 0.0 0.0 0.0 0.003916969205907238 0.0011191340588306393 26 0.0 0.0 0.0 0.004252709423556429 0.0011191340588306393 27 0.0 0.0 0.0 0.0058194971059193235 0.0011191340588306393 28 0.0 0.0 0.0 0.008169678629463667 0.0011191340588306393 29 0.0 0.0 0.0 0.013541522111850734 0.0011191340588306393 30 0.0 0.0 0.0 0.021487373929548272 0.0011191340588306393 31 0.0 0.0 0.0 0.04196752720614897 0.0011191340588306393 32 0.0 0.0 0.0 0.06446212178864481 0.0011191340588306393 33 0.0 0.0 0.0 0.08863541745938662 0.0011191340588306393 34 0.0 0.0 0.0 0.11236105950659618 0.0012310474647137032 35 0.0 0.0 0.0 0.14324915953032183 0.0012310474647137032 36 0.0 0.0 0.0 0.1829784186188095 0.0012310474647137032 37 0.0 0.0 0.0 0.24128530308388582 0.0012310474647137032 38 0.0 0.0 0.0 0.31436475712552653 0.0014548742764798309 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGAC 450 0.0 24.440308 3 ATAATAC 130 6.91216E-11 21.99628 3 CTTACAC 130 6.91216E-11 21.99628 3 CTAGCGG 135 1.1277734E-10 21.186346 29 GTCCTAC 575 0.0 20.659687 1 TAGGACG 675 0.0 20.52986 4 GACGTGA 465 0.0 20.340645 7 AGGACGT 670 0.0 20.02646 5 TAATACT 210 0.0 19.901394 4 TACCGTC 125 2.2902896E-8 19.356726 7 ATACCGT 115 2.0235166E-7 19.1272 6 TAGACGT 70 8.130298E-4 18.853954 4 TTTAGGA 595 0.0 18.853952 2 TAGCGGC 155 7.185008E-10 18.454689 30 GGACGTG 695 0.0 18.356606 6 GCTAGAT 60 0.007415466 18.331257 13 ATTTCGT 290 0.0 18.204836 42 CTATACT 135 5.531365E-8 17.922895 4 CGCAATA 160 1.0968506E-9 17.87898 36 GTATAGC 125 4.8518814E-7 17.598991 1 >>END_MODULE