##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4064178_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 978038 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.30292892505199 32.0 32.0 32.0 32.0 32.0 2 31.412625071827474 32.0 32.0 32.0 32.0 32.0 3 31.479910801011822 32.0 32.0 32.0 32.0 32.0 4 31.563260323218525 32.0 32.0 32.0 32.0 32.0 5 31.51097810105538 32.0 32.0 32.0 32.0 32.0 6 35.09094227422656 36.0 36.0 36.0 36.0 36.0 7 35.10778415562586 36.0 36.0 36.0 36.0 36.0 8 35.05907336933739 36.0 36.0 36.0 36.0 36.0 9 35.17283173046446 36.0 36.0 36.0 36.0 36.0 10 35.0237598130134 36.0 36.0 36.0 36.0 36.0 11 35.173607773931074 36.0 36.0 36.0 36.0 36.0 12 35.07596535103953 36.0 36.0 36.0 36.0 36.0 13 35.11268069338819 36.0 36.0 36.0 36.0 36.0 14 35.05380670280705 36.0 36.0 36.0 36.0 36.0 15 35.035385128185204 36.0 36.0 36.0 36.0 36.0 16 35.0509080424278 36.0 36.0 36.0 36.0 36.0 17 35.01119077172871 36.0 36.0 36.0 36.0 36.0 18 35.006455781881684 36.0 36.0 36.0 36.0 36.0 19 35.007466990035155 36.0 36.0 36.0 36.0 36.0 20 34.99486420773017 36.0 36.0 36.0 36.0 36.0 21 34.995021665824844 36.0 36.0 36.0 36.0 36.0 22 34.984799159132876 36.0 36.0 36.0 36.0 36.0 23 34.93312836515555 36.0 36.0 36.0 36.0 36.0 24 34.9062101881522 36.0 36.0 36.0 32.0 36.0 25 34.88672219279823 36.0 36.0 36.0 32.0 36.0 26 34.828039401332056 36.0 36.0 36.0 32.0 36.0 27 34.81956018068828 36.0 36.0 36.0 32.0 36.0 28 34.80551573660737 36.0 36.0 36.0 32.0 36.0 29 34.766626654588066 36.0 36.0 36.0 32.0 36.0 30 34.75204235418256 36.0 36.0 36.0 32.0 36.0 31 34.74029536684669 36.0 36.0 36.0 32.0 36.0 32 34.705818178843764 36.0 36.0 36.0 32.0 36.0 33 34.6677276343046 36.0 36.0 36.0 32.0 36.0 34 34.65292350603964 36.0 36.0 36.0 32.0 36.0 35 34.61421744349401 36.0 36.0 36.0 32.0 36.0 36 34.58370533660246 36.0 36.0 36.0 32.0 36.0 37 34.574284434756116 36.0 36.0 36.0 32.0 36.0 38 34.5461495361121 36.0 36.0 36.0 32.0 36.0 39 34.54158120645619 36.0 36.0 36.0 32.0 36.0 40 34.52134375146978 36.0 36.0 36.0 32.0 36.0 41 34.493533993566714 36.0 36.0 36.0 32.0 36.0 42 34.42584950686987 36.0 36.0 36.0 32.0 36.0 43 34.41803079225961 36.0 36.0 36.0 32.0 36.0 44 34.3615646835808 36.0 36.0 36.0 32.0 36.0 45 34.32284430666293 36.0 36.0 36.0 32.0 36.0 46 34.29725941118852 36.0 36.0 36.0 32.0 36.0 47 34.25396559233895 36.0 36.0 36.0 32.0 36.0 48 34.212692144885985 36.0 36.0 36.0 32.0 36.0 49 34.17832026976457 36.0 36.0 36.0 32.0 36.0 50 33.59586539582307 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 1.0 19 3.0 20 7.0 21 30.0 22 109.0 23 281.0 24 786.0 25 1826.0 26 3833.0 27 6956.0 28 11519.0 29 17297.0 30 25090.0 31 35054.0 32 50518.0 33 79853.0 34 164089.0 35 580784.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.710625905585 17.963329751042735 11.904895808515489 26.42114853485678 2 15.871550346460703 20.755127894457548 36.96204524796198 26.41127651111977 3 17.939133057610412 24.757191716042882 28.950395435746163 28.35327979060054 4 12.360460432007754 16.175547371370026 35.921917144323636 35.542075052298586 5 14.005284048268063 37.1838313030782 33.53816518376587 15.272719464887869 6 33.77530706915996 35.75110144094753 16.97481792611118 13.49877356378133 7 29.715031230924797 30.776749754866124 21.064336011827773 18.443883002381302 8 28.02130387571853 32.882260198478996 19.650565724440156 19.445870201362318 9 27.744269341706634 13.823618727052061 18.362338949049565 40.069772982191736 10 15.510685265978822 27.2226079185791 32.31703763385339 24.949669181588686 11 37.1176141597915 21.080797556738652 22.60906284731559 19.192525436154256 12 24.56553279681648 23.925577457703543 29.082948804595325 22.42594094088465 13 29.709324736486398 19.723363117604418 25.241888566132225 25.325423579776963 14 23.700583312458143 19.19491633734989 25.82013936106581 31.28436098912616 15 25.18982811685191 26.85109254695856 22.718841705947916 25.24023763024162 16 25.52897583080953 25.778561218459302 23.789955645169535 24.902507305561635 17 23.946308834626056 25.7060564108961 25.48469486870653 24.86293988577131 18 24.405952337132785 25.16860320070018 26.290136559390454 24.135307902776585 19 25.392264922221834 24.792594970747558 25.907480077461205 23.907660029569403 20 25.76902273659112 24.229494686752002 25.445207545394965 24.55627503126192 21 26.49181320153205 24.192618282725213 25.134401730812094 24.181166784930646 22 25.777628272112125 24.32011844120576 25.30586746118249 24.596385825499624 23 24.551037184877387 24.344090990887825 25.682084021790697 25.42278780244409 24 24.644210074281595 24.81373365983835 25.62750821800856 24.9145480478715 25 24.881852890233105 24.328079851291083 25.785108249541423 25.004959008934396 26 24.754162896158938 24.92860319943557 25.886695603715804 24.430538300689683 27 25.063600742758513 24.943761401097778 25.259413318936254 24.73322453720746 28 24.573338009548067 24.61495359402208 25.91802241106586 24.89368598536399 29 24.73489670403828 24.918533969315398 25.63866607362873 24.70790325301759 30 24.652535293498143 24.954474020283985 25.76325672562635 24.629733960591526 31 24.89414286137904 24.74618316122495 25.248653075915495 25.11102090148052 32 24.744533309339133 24.943098974043316 25.111194727273844 25.20117298934371 33 24.531950093763356 24.61293218567803 25.54166998979544 25.313447730763173 34 25.046855301218496 24.60739194139943 25.656766641683987 24.688986115698086 35 25.37964614075843 24.620660602689526 25.495901907535256 24.503791349016783 36 24.657451603535506 25.10920647385793 25.30328314743692 24.930058775169638 37 25.235607661735187 24.893072925134177 25.163828740811635 24.707490672319 38 24.692163435089995 24.821412868089908 25.573902248981035 24.912521447839058 39 25.057617940396366 24.929907545445065 25.116718507475504 24.89575600668307 40 25.14028457728535 24.90715860337092 25.458174337329194 24.494382482014533 41 24.597421905115393 25.206618752997162 25.561625711010837 24.634333630876608 42 25.262519657022033 25.15158145726783 25.25587358975565 24.33002529595449 43 24.823470228686062 24.589119672154613 25.421207293905457 25.166202805253867 44 24.508573946776195 25.105698139406 25.231360062820734 25.154367850997065 45 24.822678356892716 25.14588072902022 25.173998619667188 24.857442294419876 46 24.581224930498113 25.001150270287958 25.23815707273082 25.179467726483107 47 24.7203786429507 24.959126560935932 25.463308995019524 24.857185801093845 48 25.064109380623627 25.32688626770932 24.874030690704448 24.734973660962602 49 24.57235638024854 25.387154229812054 24.940237251465696 25.10025213847371 50 24.682573602638797 25.56547807718027 24.880115171233367 24.87183314894757 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 170.0 1 113.0 2 56.0 3 145.0 4 234.0 5 267.0 6 300.0 7 292.0 8 284.0 9 352.5 10 421.0 11 646.0 12 871.0 13 1571.5 14 2272.0 15 2888.0 16 3504.0 17 3601.0 18 3698.0 19 3688.5 20 3679.0 21 3921.0 22 4163.0 23 4720.5 24 5278.0 25 5761.0 26 6244.0 27 7571.5 28 8899.0 29 10173.0 30 11447.0 31 13368.0 32 15289.0 33 17754.0 34 20219.0 35 22864.5 36 25510.0 37 29508.0 38 33506.0 39 37412.0 40 41318.0 41 45103.5 42 48889.0 43 51823.0 44 54757.0 45 59711.0 46 64665.0 47 68449.0 48 72233.0 49 74521.5 50 76810.0 51 76272.5 52 75735.0 53 74511.0 54 73287.0 55 72427.5 56 71568.0 57 68686.0 58 65804.0 59 60090.5 60 54377.0 61 47812.0 62 41247.0 63 35482.0 64 29717.0 65 25133.0 66 20549.0 67 17383.0 68 14217.0 69 12165.0 70 10113.0 71 8093.0 72 6073.0 73 5140.0 74 4207.0 75 3296.5 76 2386.0 77 2017.0 78 1648.0 79 1366.5 80 1085.0 81 840.5 82 596.0 83 484.0 84 372.0 85 271.0 86 170.0 87 117.0 88 64.0 89 47.5 90 31.0 91 26.5 92 22.0 93 20.5 94 19.0 95 18.5 96 18.0 97 13.0 98 8.0 99 8.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.00807739576580869 2 5.112275801144741E-4 3 3.0673654806868446E-4 4 0.0 5 0.0 6 1.022455160228948E-4 7 1.022455160228948E-4 8 0.0 9 9.202096442060534E-4 10 9.202096442060534E-4 11 1.022455160228948E-4 12 1.022455160228948E-4 13 5.112275801144741E-4 14 3.0673654806868446E-4 15 0.004907784769098951 16 0.0016359282563663169 17 0.0 18 2.044910320457896E-4 19 0.0 20 0.001124700676251843 21 0.0 22 0.0 23 6.134730961373689E-4 24 3.0673654806868446E-4 25 0.0020449103204578964 26 0.0054190123492134255 27 0.006339221993419479 28 0.003987575124892897 29 0.0023516468685265807 30 0.0025561379005723706 31 0.007054940605579742 32 0.0024538923845494756 33 0.004498802705007372 34 0.00276062893261816 35 0.002249401352503686 36 0.007566168185694216 37 0.0035785930608013185 38 0.008588623345923163 39 0.004498802705007372 40 0.002658383416595265 41 0.0029651199646639494 42 0.0016359282563663169 43 0.0016359282563663169 44 0.0017381737723892118 45 0.0013291917082976325 46 7.157186121602637E-4 47 0.0019426648044350014 48 0.002249401352503686 49 4.089820640915792E-4 50 0.0016359282563663169 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 978038.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 64.72326735944439 #Duplication Level Percentage of deduplicated Percentage of total 1 81.00851319535985 52.43135657934354 2 11.96645942665609 15.490167056348113 3 3.279218201899254 6.367251492344458 4 1.2584467162229658 3.2580313308685542 5 0.6781635072042128 2.194647899509838 6 0.41812835836706985 1.6237580117494468 7 0.26893406250138197 1.2184403860536934 8 0.19643690760365423 1.017123079207503 9 0.14678094578301695 0.8550128157467687 >10 0.684267576886533 7.756100346216238 >50 0.05473024191504273 2.469583699693885 >100 0.03833038743120267 4.669281219533168 >500 0.0014314249528465494 0.5380702834711198 >1k 1.5904721698294994E-4 0.11117579991368076 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1080 0.1104251573047264 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0224551602289482E-4 2 0.0 0.0 0.0 0.0 1.0224551602289482E-4 3 0.0 0.0 0.0 0.0 1.0224551602289482E-4 4 0.0 0.0 0.0 0.0 1.0224551602289482E-4 5 0.0 0.0 0.0 0.0 1.0224551602289482E-4 6 0.0 0.0 0.0 0.0 1.0224551602289482E-4 7 0.0 0.0 0.0 0.0 1.0224551602289482E-4 8 0.0 0.0 0.0 1.0224551602289482E-4 1.0224551602289482E-4 9 0.0 0.0 0.0 1.0224551602289482E-4 1.0224551602289482E-4 10 0.0 0.0 0.0 1.0224551602289482E-4 1.0224551602289482E-4 11 0.0 0.0 0.0 2.0449103204578964E-4 1.0224551602289482E-4 12 0.0 0.0 0.0 2.0449103204578964E-4 1.0224551602289482E-4 13 0.0 0.0 0.0 3.0673654806868446E-4 1.0224551602289482E-4 14 0.0 0.0 0.0 3.0673654806868446E-4 1.0224551602289482E-4 15 0.0 0.0 0.0 3.0673654806868446E-4 2.0449103204578964E-4 16 0.0 0.0 0.0 3.0673654806868446E-4 2.0449103204578964E-4 17 0.0 0.0 0.0 3.0673654806868446E-4 2.0449103204578964E-4 18 0.0 0.0 0.0 3.0673654806868446E-4 2.0449103204578964E-4 19 0.0 0.0 0.0 3.0673654806868446E-4 2.0449103204578964E-4 20 0.0 0.0 0.0 3.0673654806868446E-4 2.0449103204578964E-4 21 0.0 0.0 0.0 4.089820640915793E-4 2.0449103204578964E-4 22 0.0 0.0 0.0 9.202096442060534E-4 2.0449103204578964E-4 23 0.0 0.0 0.0 0.0014314372243205275 2.0449103204578964E-4 24 0.0 0.0 0.0 0.002862874448641055 2.0449103204578964E-4 25 0.0 0.0 0.0 0.003271856512732634 2.0449103204578964E-4 26 0.0 0.0 0.0 0.0037830840928471084 2.0449103204578964E-4 27 0.0 0.0 0.0 0.005214521317167636 2.0449103204578964E-4 28 0.0 0.0 0.0 0.00889535989399185 2.0449103204578964E-4 29 0.0 0.0 0.0 0.016666019111731854 2.0449103204578964E-4 30 0.0 0.0 0.0 0.02995793619470818 2.0449103204578964E-4 31 0.0 0.0 0.0 0.06349446545021768 2.0449103204578964E-4 32 0.0 0.0 0.0 0.09784895883391034 2.0449103204578964E-4 33 0.0 0.0 0.0 0.132203452217603 2.0449103204578964E-4 34 0.0 0.0 0.0 0.16942082004993672 2.0449103204578964E-4 35 0.0 0.0 0.0 0.20397980446567515 2.0449103204578964E-4 36 0.0 1.0224551602289482E-4 0.0 0.2612372934384963 2.0449103204578964E-4 37 0.0 1.0224551602289482E-4 0.0 0.34589658070545315 2.0449103204578964E-4 38 0.0 1.0224551602289482E-4 0.0 0.46225197793950745 2.0449103204578964E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATACCGA 30 0.0057483013 29.329346 6 TATACCG 45 0.0013991309 24.44112 5 ACCGTCG 205 0.0 20.388514 8 GTGTAAT 145 2.9649527E-10 19.722466 1 CGTCGTA 235 0.0 19.658913 10 ATACCGT 235 0.0 19.656902 6 GTATCAA 2145 0.0 19.38297 1 CGTTATT 200 0.0 18.69937 44 GGCGTTA 190 1.8189894E-12 18.525692 42 TTCGCCG 75 0.00129048 17.600307 37 GCGTTAT 200 3.6379788E-12 17.599407 43 TACCGTC 240 0.0 17.41519 7 GTCGTAG 255 0.0 17.25432 11 TGACGAA 155 1.4359102E-8 17.034296 21 CGAACGT 105 3.7692836E-5 16.763912 26 CGGCGTT 210 9.094947E-12 16.76134 41 ATCACGA 200 7.2759576E-11 16.501131 34 CCTAGTG 80 0.0019897923 16.497757 2 ATTATAC 120 6.4123033E-6 16.497757 3 AACGCAG 2535 0.0 15.9662695 6 >>END_MODULE